Kryptolebias marmoratus (mangrove rivulus): 108244156
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Entry
108244156 CDS
T05608
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108244156 (zc3h13)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
108244156 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108244156
NCBI-ProteinID:
XP_017285580
LinkDB
All DBs
Position
LG23:complement(11584794..11601325)
Genome browser
AA seq
1839 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSTTTSSTTNPAALSRRPSVFERLGPSTGTNAADSHCRNWL
KTGSCSYGNTCRYTHGTQPRGKGFSFNRSTERPTGDLRERMKNKRQDVDPENLKRDLDEP
TSPTVRRDSSRGRHREKEDIKITKERTPASEEEPAEWETNREDSDIGDYDYELSLEMKRQ
KIQRELMKLEQENLDKRDDVLIKKDETSSKSRSTALPKASPELLSSKDSPSSRKSCSPPK
HKSGTKGSGSGKKEKKGSVALAVSEATRSSKGTHSKKKGPRTPSPPPPVPLDLPVVGKKH
KGKHKNKEKTEEKQKEGKDRGRDPEKHKEKKEKRRERSDSSHKTKRAVTSEERSGSVSSP
SRGASPAARKKSTSPKVSSHKTSSLASPPQRSPSPPHHHSSPTPPRHHSHHSPSSHSGSS
AHHRSPSPRRRRSSSPAYHRSAAAQASASSPPRSRRSRSPPASHDASSPHRRSDRSSPSQ
RRSRGRERSRGDKERSPPIQERRHEHKDESRSKREKDSVRDDRDYDSEVLSLRDARDDRD
AREARERRDVRSRGRETTRDHRDNRDVKDSRDSRAETRSSRESLEQREREREKERGREKE
RDRSDAYRKEDPPQDDRIYGRAHGRDDGGRTEVRTESRTDRADRSERGRGRANEPSDKGS
NRNSRSSQLDSGYDNWEPRSSGVRERSVERTAERSSEKVSDRDRYESDRKEHARDSSYDR
RGGHGERDRRDNRERDQRAASPNRYQRRSEESEREERREERRTDRVDDRRDDRARDRERE
RERERDREREREKEKEREREKEREAERERAREREREREREREREREEREREREERERERE
REERERERERKEREREREQRERERQREWEERERGREERRERREEARDDRPVRDTRDDRKM
SRKRLRVESSPSPRPSPKRAARDFSPADSDGYNSAEDKSERPIGRGQAKLHPQPLLPSPV
CPPPSDNGDKHRLLSQVVRPQDSLSRSPPRGAVSNEKVAHWKDEERRAAVDKREARSRHE
DLEARADRGRGGDRRGEYLTDAPSDSRSRGRDQRDSTPPPPLPAAVAAASEDRDVAVSQS
QEEGKKKTKSQRKGLKKARKDEEVVGGNSLAAAGDRFNPEPPAGATAEVPLPLHSPRKGA
KKKVHDRKRKRSRGGESDASEEEALAHPPHSKRKRGPRTPPPSMRPDHHVTGGNAESALF
SHRNNFSDWTDDDDDAADRGGLMETQAPLAPAERTLVEPLRKGGAHRMGRERERCNPPPI
APLLSQDPSILLQTMTPQPLMSQPLLRKPPPEQTRSSSMGSNQSRTSSRRLRSPSNDSAH
PEDPQGPRSRRGRLQCSGSRDRERERERERERERERPVVNDPPGAERKSRIDQLRRGEPS
RSTSSDRQDSRSHSSRRSSPDSERQARSRSRAGSYDSRERERDREPFDRDRERKDHRPQQ
QPQQPLHLQQPVQQQRDWEPEPRDWPSRGREPLLMRPAREPLLRERDIRDRERLIPEGLI
QQHERERERERERERDRDSRGERGGDRERERMMMDLPPHGDPRAPGRGDLRGDVRAEMMR
QDRSDYEPLLPKEAFSPLEPEKSGNSHHGLGDQRELEKTESIDGDDDGKEDEQSIPSVGE
EYEPISDDELDEILADSQKKDDQQEEEKITGPLDVIDVDWSSLMPKQKQEPRAAGAALLR
FTPGAVLLRAGISKRLVGPELMEQVKEVCKSELDDPKDADKLFEHDLGALNMAALNRRVE
RAGLLSNLGPCCKALCARRDFAIRRQLLKNEKGLTKQYPTTPLVDNELLQMSIRLFRKTV
AGQNSVPERSSRGSAPAAETAEANTSSKLSIAQPEVCVS
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagataaggcggaaagtaacagtggagaattcaaaaacgatatctgacagcagc
agcactacgaccagcagcaccaccaaccccgccgccctgtcccgcaggcccagtgtattc
gaaagacttggtcccagcactgggactaatgctgctgatagtcactgtagaaattggctg
aagaccggcagctgcagttacggtaacacttgtcgctacacacatggaactcagccacga
ggcaaaggattcagctttaaccggtcaaccgagagacccacaggtgatctgcgggagagg
atgaaaaataaacgacaggatgttgacccggaaaacttgaagcgagacttagacgagcca
acatccccaacagtgagaagagactcctcaagaggccgacacagagaaaaggaggatata
aagatcacaaaagagcgtacaccagccagtgaagaagagccagcagagtgggaaactaat
cgagaagattctgatatcggtgactacgactacgagttatccctcgagatgaagcgccag
aaaattcaaagggagctaatgaaactggagcaggaaaatttggataagagagatgatgtg
ctcattaagaaagatgagacttcgtcaaaatccagaagcacagcactgccaaaggcctcg
cctgagctgttaagctccaaagattcaccctcatccaggaagtcctgcagccctccgaaa
cacaaaagtggaactaaagggtccggctctgggaagaaggagaagaagggatcagtggcc
ttagctgtttcagaagccaccaggtcttccaaaggaacccacagtaagaagaaaggtcct
cgaacgccgagtcctcctccccctgttcctctggaccttcctgtagtggggaagaaacac
aaaggaaagcacaaaaacaaggagaagaccgaggagaagcagaaggaaggcaaagatcga
ggacgagatcctgaaaaacacaaagagaagaaggaaaaacgcagggaacgatcagacagt
tcccataagaccaagcgagcagtgacatcagaggagcgttctggcagtgtgtcatctcct
tccaggggtgcatcgcctgcagcaagaaagaaatccacctctcccaaggtttcgtctcat
aaaacctcatcacttgcctccccgccacagaggtctccttcccctccacatcaccacagc
agtcccactcctcctcgccaccactcccaccactctccgtcctcccactcgggttcctcc
gcccaccatcgctctccctcgccccgtcggcgtcgctcctcttcccccgcctaccaccga
agtgcagcagcgcaggcttcggcctcctcgcctccgcgctctcgccgctctcggtcacct
ccggcctcccacgacgcctcttcgccccatcggcggtccgacagatcgagccccagccag
cgccgctccaggggccgggagaggagtcgcggggacaaagagaggagtccacctatccag
gagcgcagacatgagcacaaagatgaaagccgaagcaaacgtgagaaggacagtgtccgc
gacgacagagactacgactccgaagtgctgtctctgagggatgcccgagatgaccgggac
gccagagaagctcgagaacgccgggacgttcgctcgcgaggaagggaaacgacccgagat
caccgagacaaccgggacgtgaaagactccagagacagcagggcagagacccgctccagt
cgagagtcgcttgaacagcgtgagcgggaacgggagaaagagagggggagggaaaaggag
agggatcggagtgacgcctacaggaaggaggatccacctcaagatgacagaatttatgga
agagctcatggacgtgacgacgggggtagaactgaagtgaggacggagagcaggacggac
agagccgacaggagtgaacgaggaagagggcgtgccaatgagccatctgataaaggctcg
aacagaaattctcgaagttcccaactggacagcggctacgataactgggagccgcggagc
agtggggtccgggagcgaagtgtggagaggaccgcagagcgaagctccgagaaggtttca
gaccgagaccgctatgagagcgataggaaagagcacgccagagactcctcctacgacaga
aggggaggacacggagagcgggatcgcagagacaatagagagagagaccaaagagcagct
tctccaaaccgataccagaggaggtcagaggagtctgagagggaggagagacgggaggag
cgaaggacagaccgagtagacgacagacgagacgacagggctcgagacagggagcgggaa
agagaacgggagcgggacagagagcgcgagagggagaaggaaaaagagcgcgagagggag
aaggagagggaggcagagagggagcgagccagggaacgggagagggagcgggaacgagag
agggagcgggagcgagaggagagggagcgcgagagagaggagcgggagcgagagagggag
agagaggagcgagaacgggagagggagaggaaggagagggaaagggagagggagcagagg
gagcgggagaggcagcgggaatgggaggagcgggagagggggagggaggagagacgggag
aggagagaggaggccagggatgaccggcctgttcgagacacccgggacgatcgtaaaatg
agtcgtaagaggctcagggtggagagcagcccgagcccccgaccttcgcctaagcgagca
gcgcgggacttcagcccggcggacagcgacggctacaatagtgccgaggacaaaagtgag
cgcccgattggccgagggcaggccaagctccacccacagcccctcctccccagcccagtg
tgtccgcctccatctgacaatggggataagcatcgactgctaagccaggtggtgaggcct
caggattccttgtcaaggtcgccaccaagaggtgctgtgtctaatgaaaaagtcgctcac
tggaaagacgaagagcgcagggcagccgttgacaaacgggaagcacgcagtcgccacgag
gacctggaggctcgtgcagatcggggcagaggaggcgacaggcgtggggaatacctaaca
gatgcgccctccgactctcgcagcagaggcagagaccagagagattcgactccgcctcct
cctcttcccgcagctgtcgccgccgccagcgaggacagagatgtcgcggtttctcagtcc
caagaagagggcaaaaagaagaccaagtcccagaggaagggcttgaagaaggctcgcaaa
gacgaggaggtcgttggcgggaacagtctggcggctgcaggggaccgtttcaatcccgag
cctccagctggtgccactgccgaggtgcccctacctttacattctccgagaaaaggagcg
aagaagaaggtacatgaccgcaaaaggaaacgctcacgaggaggcgagtctgacgcttcc
gaggaggaggccttggcccatccacctcacagtaaaaggaagagaggtcctcggacacca
ccaccctccatgaggccagatcatcatgtaactggaggaaacgcagagtctgccttgttt
tctcataggaataatttcagtgattggacagacgatgatgatgatgcagcagaccgagga
ggcttgatggaaacacaagctcccttggctcctgctgagaggactttggtcgagccgcta
aggaaaggtggtgcccacaggatgggcagagaaagggagaggtgtaatccaccacccata
gcccccctgctttcccaggacccttcgatcttgcttcaaactatgaccccgcagcctctt
atgtcccagcctctgctccgcaaaccgcctccagagcagacacgcagcagcagcatgggg
agcaaccagagccgaacatcatcccgacgcctgcgatcgccctcaaatgactcggcccac
ccagaagatcctcagggcccgcggtcgcgccggggcaggctgcagtgctccggctctcgg
gaccgagagagggaaagggagcgcgagagagaacgagagcgtgagaggccggtggtgaac
gatcctccgggggcagagaggaaatcgcgaattgatcagctgaggcgaggggagcccagc
cgcagcacctcatcagatcggcaagattcccgcagccacagctccaggcgcagctctcct
gattctgaaaggcaggctaggtccaggtcccgagccggttcctatgacagtcgagaacgg
gagagagacagggagccatttgaccgagacagagaacgaaaggaccaccggcctcagcag
caaccgcagcagcctctgcacctccaacaacctgttcagcaacagagagactgggagcca
gagccccgggactggccgagcaggggaagagagcccctgctcatgcgtccagctcgggag
cctctgctgagggagagggacatcagggatcgggagcgcctcatccccgaaggactcatc
cagcagcatgaacgggagcgtgagagggagcgagagcgggagcgggacagagacagccga
ggtgaaagaggcggagaccgggagcgggagcgaatgatgatggatctaccgccgcacggt
gatccgagagctccgggacgaggggacttgagaggagacgtgagagcagaaatgatgagg
caggacaggagcgactacgagcctctgctgccaaaagaagccttcagtcctctagaacca
gagaaatccggcaacagccatcatggcttgggagatcagagggagctggagaagactgaa
agcattgatggagatgatgatggaaaagaagacgaacagtcaatcccgtctgttggagaa
gagtatgaaccgatcagtgatgatgagctggatgaaattctggctgacagtcagaaaaaa
gatgatcagcaagaggaggagaaaattacaggtccgctggatgtgattgacgtggactgg
tctagtctgatgcccaaacaaaagcaggaacctcgggcggcgggcgcagccttgcttcgt
tttacccccggggccgtgctgctgagagctggcatctccaagcggctcgtgggacctgaa
ctcatggagcaagtcaaagaggtgtgcaagtcagagctggatgatccgaaagatgctgac
aagctgtttgagcacgacctgggcgccctgaacatggccgccctgaacaggcgggtggag
agggcaggtttgctgagcaacctcgggccctgctgcaaagccctgtgtgctcgcagggac
ttcgccatccgccggcagctgctaaaaaacgagaagggcctaactaagcagtaccccact
acacctttggtggacaatgagctgctccagatgagcatccgtctcttcaggaaaaccgtg
gctggccagaactctgtcccagagaggtccagtagagggtcggctccagcagctgaaaca
gccgaagctaatactagtagtaagctaagcatagctcaaccagaggtgtgtgtgtcctga
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integrated database retrieval system
