Kryptolebias marmoratus (mangrove rivulus): 108244276
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Entry
108244276 CDS
T05608
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108244276 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
kmr04091
]
108244276 (frem1a)
Lectins [BR:
kmr04091
]
C-Type lectins
Lecticans
108244276 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
108244276
NCBI-ProteinID:
XP_017285829
UniProt:
A0A3Q3AX16
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All DBs
Position
LG7:16490198..16524354
Genome browser
AA seq
2177 aa
AA seq
DB search
MGSQGQIVAFTLLPVLLLGLTCSSHSSLVKVNRGLKVKQGQSAYLQEGDLQFHIPVQRDA
CKVEVVLNEPITQRVGKLIPQVFDCHYLSDEVKYVHNGCPLLKEDTVKLRLYRFTETETY
MEDFSLHVDIMKPECSIIRLGPKFLEVPEFYGLSDAVDGNVVSFHYERRSALECRVHLSH
HDSHLPAHGQLVTGEPDKATKRGDEPESFISLRQQLENKARAMCKSEDCLRGLKLVKFTK
ISCEDFLLMGLKYQHIDPPSPDVDYIAIRLDLKDTRSGSIYQSEQAWIPVQIAGAMPNQA
PKPSFMSMFILEVDQFILTPLSTATVDAEDEETPKQLLVFNITKPPQEGFITHLSDHTRP
IFSFTWLDLNDMLIGYQPPNSSHTQRRNYEVEFEVYDFFFEKSPSMTVHTSVRNADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNIKAVRIIIVDGLHHGQLTVRGGKGFTFTVS
DIKAGVVCYLHDDSDSTKDFIVFRITDGHHQTRHKFPIKILPKDDSPPFLITNMLLEVSE
GQTALLRGSILQASDMDSTDDYVLFNITRPPQAGEVMKFPGSGLTGYPVSHFLQKDLTHS
IIYYRHFGSEVFDDSFEVVLSDFHDPPNLSEPQMVIVHIEPVPDQPPKEVPGSSRCLVIK
ETEVVYITRQQLHFVDQESPDSELTYTVTTPPFFTGPHSNPDAGRLFLVDSIPKFTKDSN
APVLRLFTQHAVNFMKVAYMPPVTDIGPNPKSVQFVLSVTNHLGKTVPGICFNITIVPVD
NQPPQVITNSLTVDEGGECLLGPEHLHMSDVDSAQDALQVELQKEPEHGALLLSGYPLTA
GQTFDLQDLKSLKVRYTHDNSETTEDTVEFMATDGTNSARFTLLINVTPINDEVPVMIDG
LKPVLRCAEGQEMIITAEYIYATDADSDNSSLAFLIARQPYYGVVLRNGVVVDRFVQADV
TTGIISYRHTGLEIGLIPRQDTITFVISDGETETSALCCSGGNTRSEDTTRLRDSLPVYD
LHITVFPVDSQPPSLETGDIFMVDEGGTAPITVSHLKASDTDTALDELVVSLISPPQFGY
IENILPSPGFEKSNTGISTTSFLYTNIMEAHINYVQSRHQKMEPTADQFMLCVSDGKHSS
AHMPFYIIINPTNDETPEFVAHNITVREGEMKQLDLSVLHAVDLDVPKNVLLFTVVRPPQ
HGNILHHSDGKLTKRREASLQSPILDFTMADLKNGMDLMYMHDDSENMKDSFTLQLTDGK
HQLQRQVMVEVVPVNDEEPRVIRNNGLAVEPGEARIISSVALLAEDGDTPSSELMYIFES
VPTQGLLQFREGQLWGTLTAGMNCSQDMVDMNLLRYVHTGFHASKTQDFFIFHLLDGKNE
SPSQHFQISIKDLEKGNIAIFVKPVNVRRGDRVVLSTDVLLATDGSNKPEELLYVITNPP
AHGHVEYVNHPGLVISTFSQMDIAANLVAYVHDNRATKATETFQFVVSNGKTSRNGSFEV
LVEMVDHILPTLTSNNGLTVPQGSAMILGPDCLFLSDPDTPPSALTFVLRQPPQYGSLVL
AGTTLTAGSNFTLRDIKELDVTYKHDGGPSQIDRFAFTAADSSSRGFLLDGRLQTEPVFF
TIQIKLLDKSSPEVKKLLPLWKAELLADGRYGIFLSSRELKAHDDDSSDEELIFSIVRPP
HFGYLENITTGRFVSQRFSQVELNKRTIVYIIDPGRESLSDSLQFRVSDALSNLGPAHTL
EFKWSSVELSQAEVSACEEQGTISLDITRKGNLAESSYVTVKVKEGTATAGKDFLVNPSA
LIQFDPGVSKRRWQLELIQDHIEEADEHCEVQLVSPEATVIKSINKAELTIRDSGQCRLN
QDSQTPLLGGKEIRSDTYPQHGSIQLEKLPLGTETVVWTRGNSISVSRERLPRKKLRVVT
NPISIAPSSVFHNGTDIVYTYHGITQVQVEDDTFPFKKNRKANIRVVSRGPQLQHPPGVP
PGKMADPPLKVPKLQRNGLAKEHAADDNSDPKPCVPELMGLLHFNQTTKQLFLCDGVSWK
LWAPTDQMVSAQLCPRGWTFYGGHCYVLSTEHKVTWRAANRACRERYKGSLASVSSKGDM
DWLWDFSGRKPFWLGLNDREGRGRWEWADGEPVSYTNWRKTPPRSSRKCVLVWRRAKWQI
RDCGSGRGHCFVCSVKT
NT seq
6534 nt
NT seq
+upstream
nt +downstream
nt
atgggttcacagggtcaaatcgtggcctttacgttgcttcctgtgctcctgctgggattg
acctgctcgtctcacagctcccttgtgaaggtcaacaggggtttgaaggtgaaacaaggt
caatcagcctaccttcaggaaggtgacctgcagttccatatcccagttcagagggacgcg
tgcaaagtggaagtagtgttaaacgagcccataactcaacgtgtgggaaaactcattcct
caggtatttgattgccattatctgtctgatgaggtaaagtacgttcacaatggctgtcca
ttactaaaggaggatacagtcaaacttcgtctgtacaggttcacagagacagagacatac
atggaggacttttctctccatgtggacattatgaagcctgaatgcagcatcattaggctg
gggcccaaattccttgaggtccctgagttttatggcctctccgatgctgttgatggtaat
gtggtgtcctttcactatgagaggagatctgcactggaatgtagggtccacctgagtcac
catgattctcacctgcctgcccacggccagctggtcacaggagaaccagacaaagctacc
aaaagaggggatgagccagagagctttatttctctgcgccagcagctagaaaataaggcc
agggcgatgtgcaagtctgaggactgcctgaggggtctgaagcttgtgaagtttaccaaa
atttcctgtgaggactttttactgatggggctgaagtatcagcacatagatcccccgtct
ccggatgtggattacattgcaatcagactagacctcaaagacaccaggagtggcagcatt
tatcagtctgagcaggcctggattccggtgcagatagctggtgcgatgcccaaccaggct
cccaaaccatcattcatgtctatgtttatcctggaggtagaccagttcatcctcactcca
ctctccactgctacagtagacgccgaagacgaggaaacccccaaacagctgcttgtcttt
aacatcaccaaacccccccaggaaggctttatcacccatctttctgatcatacgcgtcca
attttctctttcacatggcttgatctcaatgacatgcttatcgggtatcaacctccaaat
tcttcacatacgcagcgtaggaattacgaggtggaatttgaggtttatgattttttcttt
gagaagagcccatcgatgaccgttcacacttctgtaagaaatgcagacacaaatgcgccg
agagtttcctggaatatgggtctgagtctcctagagggtcagtctcgtccaataacgtgg
gaccagcttcagattgtggataacgacaacataaaagctgttcgaatcatcattgtggat
gggctgcaccacgggcagctcactgtaagaggcggaaagggcttcaccttcactgtcagt
gacataaaagccggtgtggtctgttatctccacgacgacagcgactctaccaaggacttc
atcgtcttccgcattaccgatggccaccatcagacccgacataagttccccatcaagatc
ctccccaaagacgacagtcctccttttctcataacgaacatgctgctggaggtctcagag
ggacagacagctttgctgagaggctccatcctccaggcttcagacatggactccactgat
gactacgtcctctttaacatcacccgccccccgcaggcaggagaggttatgaaattccca
ggatcagggttgacaggttatccagtgagccactttctccagaaggaccttacgcactct
ataatttactatagacactttgggagcgaggtgtttgatgactcatttgaggtggtgctg
tctgatttccatgatccccccaacctgtcagaacctcaaatggtgatagtgcacatagaa
cctgttccagaccaaccccctaaagaggttcctggttccagtcggtgtcttgtgattaaa
gaaaccgaagtggtctatattacacggcagcagctccactttgtagaccaggagtctcca
gacagtgagctcacatacacagttactactccacctttcttcactggtcctcacagcaat
ccagatgcagggaggttatttcttgttgacagcatccccaaatttaccaaagactccaac
gcaccagttttgagactctttacacaacatgcagtgaacttcatgaaagtcgcctacatg
cctccagtcacggacatcggtcccaaccctaaatctgtccagtttgttctatctgtaacc
aatcatctgggtaaaacggtccctgggatctgctttaacatcactatagtcccagtggac
aaccagccaccacaggtcatcaccaactctttgactgtagatgagggaggggagtgcttg
ctgggccctgaacacttgcacatgtcagatgtagactctgcacaagacgccttgcaggtg
gagcttcaaaaggaaccagagcacggggctctgctcctcagtggctatccacttacagca
ggccagacctttgatctgcaagacctgaaaagccttaaagttaggtacacccatgataac
tcagaaactacagaagataccgttgaatttatggcaacagatggcaccaattcagctcgt
tttactctgctcataaatgtaactcccatcaacgatgaggttccagtgatgattgatggt
ttgaagccagttctcagatgtgcggaaggacaagaaatgatcatcactgcagagtatatc
tatgccactgatgctgacagtgacaacagcagcctagccttcctaatagcccgccagccc
tattatggtgtggtgctgcgaaatggtgttgtggtcgaccgcttcgtccaagcagacgtc
actacagggatcatctcttacagacacacaggactggagatcggactcattccacgccaa
gacaccatcacctttgtaatttctgatggcgagacggagacctccgctttatgctgcagc
gggggaaacaccaggagtgaggacacgactcgtctccgggacagcctgcctgtatacgat
ctccacataacagtgtttcctgttgatagccaacccccttcactggaaacaggtgacatc
tttatggtggatgaaggtgggactgccccaataacagtgtctcatttgaaggcctctgac
acggacacagccttggatgagcttgtggtcagtctgatttctcctccacagtttggttac
atagaaaatatcctccccagtccgggctttgagaaaagcaacacaggcatcagcacaact
tcgtttttgtacacaaacattatggaggcccatattaattacgtccagtccagacaccag
aagatggagcccacagctgatcagttcatgctctgtgtatcagatggcaagcacagctct
gcccacatgccattttacatcataattaacccaacaaatgatgaaaccccagaatttgtg
gctcacaacatcacagtacgagagggagaaatgaagcagctggacttgtctgttctccat
gcagtggatctggacgtacccaagaacgtcctgcttttcaccgtggtcagacctcctcag
cacggcaacatcctccaccacagtgatggaaaactcacaaagaggcgagaagccagtctg
caatctcctatccttgactttaccatggcagatcttaaaaatggtatggatctgatgtat
atgcacgatgactctgaaaacatgaaggatagttttaccctgcagctgactgatggcaaa
catcagctccagagacaggtgatggttgaagtggtgccagtgaacgacgaagagcctcgt
gtcatcaggaacaacggactggcggtggagccaggagaggccaggatcatatccagtgtt
gcgttgttggcagaggacggagacactccgtcctcagagctgatgtacatatttgagagt
gtccccacgcaaggactgcttcagtttagggaaggccagctgtgggggacgctgacagct
gggatgaactgtagccaggatatggtggacatgaaccttttacgttacgtccacacaggc
tttcatgcttctaaaacacaagacttcttcatcttccacttgctggatggaaagaatgaa
tcaccatcacagcatttccagatctctatcaaagatttagaaaagggaaacattgccatc
tttgtgaaaccagtgaatgtcagacgcggcgaccgtgttgttctcagcaccgatgtgctg
ttagccaccgatggtagcaacaaaccagaggagcttctgtatgtcatcaccaacccacct
gctcacggacacgtagagtacgtcaaccatcctggactggtcatctccacgttcagccag
atggacatagcagcaaaccttgtggcttatgtccatgacaaccgagccaccaaggcaaca
gagacttttcagtttgttgtcagcaatggtaaaactagtcgaaatggaagctttgaggtt
ctagtggaaatggtggatcacatcctgccaactctgacctccaacaatggtcttacggtc
ccacaaggctccgccatgatccttggtcctgattgcctgttcttgtcggacccggacact
ccacccagtgccctgacctttgtcctccgacagcctccgcagtatggcagcctggtttta
gcaggcaccaccctgacagctggctcaaacttcaccctgagagacataaaggagctggac
gtgacatacaaacacgacgggggcccatcgcagatcgatcgatttgctttcacggccgcc
gacagctcatctcggggcttcctgctggatggacggttacaaacagaacctgtgttcttc
acgattcagatcaagcttctggataagtcatctcctgaagttaagaagctgctccctctt
tggaaagcagagcttttagcagatggccgatatgggatcttcctgtcatcccgggagctg
aaggctcacgacgatgacagcagtgatgaggagctaatattttccattgttcgtccacct
cattttggctaccttgaaaacattaccacaggaaggtttgtgtcacagcgtttctctcag
gtggagctcaacaaaagaactatagtttatatcatcgacccgggcagggagtctctctct
gacagcctacagttcagagtctccgatgctctgagcaatttagggcctgctcacacactt
gagttcaagtggtccagtgtggagctttctcaggctgaggtctcggcctgtgaggagcag
ggaaccatctcattggacattactcgaaaagggaacttagctgagtcatcatatgtcact
gtcaaggtaaaagaggggactgcgactgccggaaaagacttccttgtgaacccctcagct
ctcatccagtttgatccaggcgtgtcaaagcggaggtggcaactggagctcattcaggac
cacattgaggaggcggacgagcactgtgaggtacagctagtctctcctgaagccacagtg
attaaaagcatcaacaaggctgaactcaccatcagagactcagggcagtgcaggctaaac
caggattctcagacccctctgcttggaggaaaagagattaggtcagacacttatcctcag
cacggatccattcagctggagaaactcccccttggcacagaaactgtcgtatggacacga
ggaaacagcatctccgtgtccagggaaaggctcccaagaaagaaactaagagttgtgacc
aatcccatatctattgccccctcatcagtgtttcacaatggaacagacattgtttacacg
taccatggaattacacaagtacaagtggaggacgacaccttcccattcaagaagaacaga
aaggcaaacatccgggtggtcagcagagggccacagctccagcaccctcctggtgttcct
cctggaaaaatggcagatcctcctcttaaagttccaaaactacaaagaaatggactcgct
aaggaacatgcagcagatgataactcagatcccaaaccgtgtgtgccggaactgatggga
ctcctgcatttcaaccaaaccaccaagcaactctttctctgcgacggtgtgtcctggaaa
ctgtgggcaccaactgatcagatggtgagtgctcagctgtgtcctcggggctggaccttc
tatggtggacactgttacgttctcagtactgagcacaaggtcacgtggagagctgcaaac
agggcctgcagggagagatacaagggatctcttgcaagtgtttcctccaaaggcgacatg
gactggctgtgggacttcagtggaagaaagcccttctggctaggcctgaacgacagggag
ggccgagggcggtgggagtgggccgacggcgagcccgtcagctacaccaactggaggaag
acgcccccccgctccagcagaaagtgcgtcctggtgtggagaagagccaagtggcaaatc
agagactgcgggagcggcaggggtcactgctttgtgtgctcagtgaagacttga
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integrated database retrieval system
