Kryptolebias marmoratus (mangrove rivulus): 108244302
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Entry
108244302 CDS
T05608
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X3
KO
K06823
collagen type XVIII alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
kmr04147
]
108244302 (col18a1a)
00535 Proteoglycans [BR:
kmr00535
]
108244302 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108244302 (col18a1a)
Exosome [BR:
kmr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108244302 (col18a1a)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108244302 (col18a1a)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108244302 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
108244302
NCBI-ProteinID:
XP_017285881
LinkDB
All DBs
Position
LG6:3927584..3999658
Genome browser
AA seq
1414 aa
AA seq
DB search
MWLDIMPIMKIQFGVLFLLAQWVVCSDAWFWFLSGTTTLAPVVEQEGSGSLAGSGESPSE
SNASVGAEIIDEELGIPKVEQTWAETTRAPELTTIIPSVQPKSEYTSEKTTPGISSHTSK
PEDNVSLLELIGDPPPDEISKVEGPDNNPGYLFGPDTSTGQLALAHFPSSFYRNFALIFS
VKPTSDNGGVIFSITDSSQETVHVGVRLSAVQKDKQDIIFYYTETDSEQSKEAARFHVPS
MTETWNRFAISVRDNKVMLYLNCDVDPQVMHIQRSTDKMELKPGAGVFVGQTGGSKPDKF
KGAISDLRVVGDPRAAETLCEEEEDDSDMASGEGSGNEETRLPSHYRDKPRYTTASPSFP
PIPQPPLRRKGEEAFIRETAGDSEHFLVSMGSKSRLLDSAGAVAAKGVKGERGDKGEKGD
RGPIGPKGESGSGFSSRGANRGDKGEPGEKGTKGNAGFGYQGTKGEPGLPGKPGPPGPPG
PATEYSLGSDGSVVSRVPGPRGPPGPPGSQGPPGEDGELGDPGEDGKTGPQGPPGFPGTP
GDPGSKGEKGDRGEGQPGPRGPPGLPGPPGPGLRFTFEDMEASGFPDQESIRGPPGLPGP
PGPPGPPGSSTSGTAISSGAFGPPGKDGAPGQPGLPGLPGADGLPGAPGSKGEKGDSGDL
GLPGAIGEKGAPGELGLPGPPGETGLAGLPGPMGPVGSPGPPGPPGPSYRVGFDDMEGSS
GSFTNGLTGVRGPAGLQGLPGLPGQPGKPGLPGIQGPKGDQGPAGNDGLPGLDGFPGPPG
QKGASGDKGQMGEPGRDGTGSPGPPGPPGPPGQIIYQPSENFDNFAGSVGSQGGPGLPGR
AGFPGPVGPKGDRGDPGPPGYGLKGEKGEPGFIIGPDGNPLYLGGLTGPKGDRGPSGPVG
PSGPSGPPGIKGEFGMPGRPGRPGVNGYKGEKGEPGGGAGYGYPGVPGPPGPPGPPGPPG
SAISLDRFNRYEETSRNYQAIKGEKGERGERGLPGAASNFDIYAIKNELKGERGDSGVKG
EKGESGAGYYDPHFGGLQGPPGPPGSPGLPGPKGDSITGPPGPQGPSGPPGVGYDGRPGP
PGPPGPPGPTFSGPYQPNYPVSVPGPPGPPGPPGSPGRSSGATVLRSYDTMIATARQQPE
GSLIYILDKADLYLRVRDGLRQVMLGEYNSLLGDLGNEVAEVQPPPVILYPHNPDRPHNN
GAGRYSESGSVIRSAEPPQQQLHPPVSGPAGRVEIIESGLHLVALNAPQTGNMRGIRGAD
FMCFQQARAVGLKGTFRALLSSRLQDLYTIVRRLDRSGFPIVNLKNQVLFNSWESIFSND
SSRMRENVPIYSFDGRDILRDSAWPEKMIWHGSSRKGHRQMDHYCETWRAGDRAVTGLAS
SLQSGHLLQQTPSSCSNSYIVLCIENAFMSASKK
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtggttggatatcatgccaataatgaagatccagtttggagttttgtttttgctggcc
cagtgggttgtctgctctgatgcttggttctggttcctgtctggtaccacaacattggcc
ccagtagtggagcaagagggttctggcagtctggcaggtagcggagagtcgccgtctgag
agcaacgcaagtgttggagcagaaatcattgatgaagaacttggaatcccaaaggttgag
cagacttgggcagagaccaccagggctccagaactgaccaccataattccttcagtgcaa
ccaaagagtgaatacacatcagaaaagacaactccagggatttcatcacacacaagtaaa
cctgaagacaacgtctcactgctggaactgattggggatccgcctccagatgaaatctcc
aaggttgaaggaccagacaataaccctggctacctctttggtccagacaccagcacgggc
cagctggctcttgcccacttcccaagctccttctacagaaactttgccctcatcttcagt
gtgaaacccacttctgacaatggtggagtcatcttctccatcacggattcctcccaggag
accgtgcatgtgggtgttagactttcagctgtgcagaaagacaaacaggacatcattttt
tactacactgagactgactcagagcagtccaaagaagcagccaggttccatgtgccctcg
atgacagagacctggaaccggtttgctatttctgtgagggataacaaggtgatgctctac
cttaactgtgatgtagaccctcaagtgatgcacattcagagatccacggataagatggag
ctgaaacctggtgctggagtctttgttggtcaaactggagggtctaaacctgacaagttt
aagggtgcgatcagtgatctgagggtggtgggagacccccgtgctgccgagacgctctgt
gaggaagaggaagatgactcagatatggcttcaggagaaggaagtggcaatgaagaaacc
agacttccaagtcattacagggacaagcccagatacacgactgcgtctccatcttttcca
cccatcccgcagccaccgctgagaagaaaaggggaggaagcgttcatcagagagactgct
ggtgactcagagcattttttagtttctatgggatccaagtccagacttcttgattcagca
ggtgccgttgctgctaaaggagtgaagggtgaaaggggggacaagggagagaaaggagac
cggggtccgattggaccaaagggagaatcaggttctggcttcagctcacggggggcaaac
cgtggagacaagggagaacctggtgaaaaggggacaaagggcaacgcgggcttcggatat
cagggcacgaagggtgagcctggcctgccgggaaaacccgggcctccaggtcctccagga
cctgcaactgagtattcacttggaagtgacggatcagttgtttcaagagtccctggacca
cgaggaccacctggaccacctggctcccagggacctccaggagaagatggagaactgggg
gatcctggagaggatggaaaaactggtcctcagggacccccaggcttcccaggaacccct
ggtgaccctggatccaaaggagagaagggtgaccgtggagagggtcagccaggacccagg
ggacccccaggacttcccggtcccccaggaccaggattgagatttacctttgaggacatg
gaggcctctgggttccccgatcaggaatccattcggggacctcctggtctaccagggccc
cccgggccaccaggtcctcctggttcctccacgtccggcacagcaatcagctctggagca
tttggacccccaggcaaggatggagcacctggtcagcctggcttaccgggtttaccaggt
gctgatggcctcccaggagctccgggttccaagggagaaaagggtgattcaggcgatctg
gggcttccaggagcgattggagaaaagggagctccaggagagcttggattaccaggacca
ccaggggagactggtctagctggtcttccaggacccatgggaccagttgggtctcccgga
ccaccggggccccctggacccagttatcgtgttggatttgatgacatggaggggtccagt
ggaagtttcaccaatggactcaccggcgtcagaggaccagcaggactacagggtctgcct
ggtttacctggacagccaggtaaacccggtttgcctggcatacagggtccaaagggcgat
cagggtcctgctggaaatgacggcctgccaggcctggatggcttccctggacctccgggc
caaaagggtgcctcaggcgacaaaggacagatgggtgagccaggtcgagatggaactggg
tcaccgggtccaccgggtccacctggaccaccaggacaaatcatctaccagccgtctgag
aattttgataattttgctggaagcgtcggctctcagggtggaccgggtttacccggcaga
gctggatttcctggtcctgttggaccaaaaggtgacagaggtgaccctggtccaccaggt
tatggactgaagggtgaaaaaggagagccaggttttataattggacctgatgggaatcct
ttgtatctgggaggactaactggcccaaagggagacagaggaccttctgggcccgttgga
ccttcaggtccatccgggcctcctggaataaagggtgaatttggaatgcctggaagacct
ggtcgtccaggtgtgaacggatacaagggtgaaaaaggagagccaggaggaggcgcaggt
tatggttatccaggagttcccggcccaccaggacctccagggccgcctggacctcctggt
tcagccatttctctcgatcgtttcaatcgctatgaagaaacttcaaggaattatcaagca
attaaaggggaaaaaggagagcgaggtgaacgtggacttcctggagctgcctcaaatttt
gacatttacgcaataaagaatgaactgaaaggagaacgcggagactcaggtgtcaaggga
gaaaagggagagtctggtgctggatattatgacccacattttggaggattacagggccca
ccaggacctcctggtagccccggcctaccgggtccaaagggagattctataaccggccct
ccaggaccccagggaccttcagggccaccaggggttggttatgatgggcgtcctggtcct
ccgggaccacctggacctcctggacccacattttctggcccatatcagcctaattatcct
gtcagtgtacctggaccccctggtccacctggcccacctggaagtcctggtcgctcatct
ggggccacagttctgaggtcatatgacacaatgattgctaccgccaggcagcagccagag
ggcagtctgatatacatcttagacaaagcagacctttatttgagagtgcgtgatggactg
cgacaagtcatgcttggagagtacaattccttgttgggagatttgggcaacgaggtggca
gaagtccagcctccacctgtgattctgtaccctcacaacccggaccggcctcacaacaac
ggagcgggccgttactcggagagcggttctgtcatccgatccgctgagcccccccagcag
cagctccacccacctgtgtctggtcctgctggccgtgtggagatcatagaatcaggactg
cacctggttgccttgaacgcgcctcagaccggcaacatgcgagggattcggggtgcggac
ttcatgtgcttccagcaggctcgcgctgtggggctgaaaggaaccttcagagccctcctg
tcctccaggcttcaggacctctacaccatcgtccgcaggctggacaggagcggcttcccc
atcgtcaaccttaagaaccaagtgctgtttaacagctgggagtcgatcttcagcaacgac
agcagcagaatgagggaaaacgtaccgatttactcctttgatggtcgagacatcctcagg
gacagtgcatggccggagaaaatgatctggcacgggtcgagcaggaagggccaccggcaa
atggaccactactgtgaaacgtggcgggcaggcgaccgcgccgtgaccggtctggcatcc
tctctgcagagcggccacctcctgcagcagacccccagcagctgctccaactcctacatc
gtcctctgcattgagaacgccttcatgtctgcatccaaaaaataa
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integrated database retrieval system
