Kryptolebias marmoratus (mangrove rivulus): 108244585
Help
Entry
108244585 CDS
T05608
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108244585 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108244585 (scn8aa)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108244585 (scn8aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
HpsJ
GPHH
Motif
Other DBs
NCBI-GeneID:
108244585
NCBI-ProteinID:
XP_017286393
LinkDB
All DBs
Position
LG8:complement(18332404..18384743)
Genome browser
AA seq
1965 aa
AA seq
DB search
MAAPLLAPPGPDSFRKFTRESLVVLEQRIQEEKNKKPPKQDSSYRDDDDENKPRPNSDLE
AGKSIPFIYGDVPPGMVTVPLDDLDPYYLNSQKTFIVLNKGKTIFRFSATPALYFISPFN
PVRQIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDNFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPINLNETYLNNGSKG
FDWDEYINNDTNFYFLPNQLDALLCGNSSDSGRCPEGYMCMKAGRNPNYGYTSFDSFGWA
FLALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQ
ATMEEAAQKEEEFKAMLEQLKKQQEEQTAPPATSAGTVSEDAVEDDGGGRLSVSSSEMSK
LSSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMN
QSLLSIPGSPFLSRHNSKSSIFSFKGRGKDMGSETEFADDEHSTVEECEERRGSLFSPYR
RNSYTGFHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAASDDSPTTEVEVKKKLSGS
LMVSVDQLNTSFGRKERANSVMSAITNTLAEELEESQRKCPPCWYKFSNTFLIWECSPKW
IRIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEHMLSVGNLVFTGIFAGE
MLFKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWP
TLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISQDCELPRWHM
NDFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLNLFLALLLSS
FSADNLAATDDDGEPNNLQISVMRIKKGIAWIKAKMRLLMASLLKKPPMEDEQKPLDDMY
DKKVNYIGNHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPI
AVGESDFENLNTEDFSSESDIENSKELDDTSSSEGSTIDIKPDVEEVVVVETVEEYMEPE
SCWTDACVAKYKCCDVDITMGWGKSWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAFE
DVYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVS
LVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW
LIFSIMGVNLFAGKYYFCYNETSEEMISVDVVNNKTQCVALINENFTEVRWKNVKINFDN
VGAGYLALLQVATFKGWMDIMYAAVDSRDVEDQPDYEVNIYMYIYFVVFIIFGSFFTLNL
FIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKVQGLVFDF
VTQQVFDISIMILICLNMVTMMVETDDQSEQTENVLYWVNFIFIVVFTTEFLLKLFALRH
YYFTNGWNIFDVVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIR
TLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDLYNFETFGNSMIIL
FMITTSAGWDGLLLPILNYPPDCDPNFENPGTSVKGDCGNPSVGIFFFVMYIIISFLIVV
NMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFISFAKLPDFADALEHP
LRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRTQMEERFVAANP
SKVSYEPITTTLRRKQEDVSARTIQNAYRSHLIRRGIIFKRILSNNRLENGGTNQEKKES
TPSTASLPSYDSVTKPDKEKQDKNKEEWAKKEKDKNQKDEWESKC
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttctcgcaccgccaggacctgatagcttcaggaagtttacgagggag
tctttggtggtccttgagcagcgcatccaagaggagaagaacaagaagccgcccaagcag
gacagcagctaccgcgacgacgatgacgagaacaagcccagacccaacagcgacctggag
gccgggaagagcatccccttcatctacggggacgtccctccgggaatggtgacggtacca
ctggatgatctggatccatactacctgaattctcagaaaacatttatagtgctaaataaa
gggaagacaatcttccgttttagtgccacacctgccttgtacttcataagtcctttcaat
ccggttaggcaaatagctattaaaattttgatacattctcttttcagcatgatcatcatg
tgtactattttgaccaactgtatattcatgacctttagtgatcctcccgagtggtccaaa
caagtagagtacacattcacaggaatttatacatttgaatcgcttgtaaaaatcaccgct
cgtgggttctgtatagacaattttacattcctaagagatccatggaactggctggatttc
atggtcatttcgatggcatatataacagagtttgtggacctgggcaatgtatctgcgctg
agaacgttcagagttctccgagcattgaaaactatctctgtcattccaggcctgaagacc
attgtgggtgccctgatccagtcagtgaagaagctctcagatgtgatgatcctgaccgtc
ttctgcttgagtgtcttcgccctgattggtctccagctcttcatgggcaatctgcgccaa
aagtgtgtgatctggccaatcaacctcaacgagacttacctgaacaacggcagcaagggc
tttgactgggatgagtacatcaacaacgataccaatttctacttcctgcccaaccagttg
gacgccctgctctgcgggaacagctccgactctggccgctgcccagagggctacatgtgc
atgaaagctgggaggaatccaaactacggctacaccagctttgacagcttcggctgggcc
ttcctggctctcttccgactcatgacacaggacttctgggaaaacctttacatgctgacc
ctgagggcagcagggaagacctacatgatcttcttcgtcctggtgatctttgtgggctcg
ttctacttggtgaatcttattctggctgtggtcgccatggcgtatgaggagcagaaccag
gccaccatggaggaggctgcgcagaaggaggaagaattcaaggccatgcttgagcagctg
aagaaacagcaggaggagcagactgctccccctgcgacctccgctggcacggtgtcagag
gacgcagtggaggacgacggaggagggcgtctgtctgtcagctcctctgagatgtcaaag
ctcagctcgaaaagtgccaaagagcgccgcaaccgcaaaaagaagtggcgacagaaggag
caggagaaggagaaaggcgacagcgagaagttcgtcaagtcagagtcagatgacggcagc
aaaaggagccgcttccgattccccgataaccgcctgggtcgaaagtcttccattatgaac
cagtctctcctgagcatacccggctcgcccttcctctcccgtcacaacagcaagagcagc
atctttagttttaagggccgcggtaaggacatgggctcggagactgagttcgccgacgac
gagcacagcacggtggaggagtgcgaggagcgccgcggctccctcttcagcccctaccgg
cgcaacagctacaccggcttccacgggaagaggaacagcacggtggattgcaatggagtg
gtgtcactcattggccccgggcccggtggacgccttctgcctgaggtgaaaatagataag
gcagcttctgacgacagtcccactactgaggttgaggtgaagaagaagctgtcgggctcc
ctgatggtgtctgtggaccagctcaatacctcctttgggcggaaagagcgggccaacagt
gtcatgagcgccattaccaacacactagcggaggaactggaggagtctcagcgcaagtgt
ccgccatgctggtataagttttctaacacattcctgatctgggaatgctcccccaaatgg
attaggatcaaggagattgtaaacctgatagtcatggatcccttcgtggatttggctatt
actatctgtatcgtcctcaacaccctcttcatggccatggagcactaccccatgacgcct
gactttgagcatatgctgtctgtaggcaatctggtgttcacagggatctttgcaggagag
atgctcttcaagcttgtggccatggatccgtactactacttccaggaggcctggaactgc
ttcgacggatttattgtaacgctgagtttagtggagctggctctggctgatgttgagggc
ctctctgtgctgcggtcattccgattgctgagagtgtttaaactggccaagtcttggccc
accctcaacatgctgattaagatcatcggtaactcagtgggagcgttgggaaacctgact
ctggtgctggccatcatcgtctttatctttgctgtggtgggcatgcagttgtttggaaag
agctacaaagactgtgtgtgtaaaatctctcaagactgcgagctgccccgctggcacatg
aacgacttcttccactcttttctgatcgtctttcgggtgctgtgcggcgagtggattgag
accatgtgggactgcatggaggtggcgggccaggggatgtgcctcatcgtcttcatgatg
gtcatggtcattggtaaccttgtggtgttgaacttgttccttgccttgctgctgagctca
ttcagcgctgacaacttggccgcgacggatgacgacggcgagcccaacaatctgcagatt
tccgtcatgcgcatcaagaagggcattgcatggataaaagcgaagatgcggctgctgatg
gcgagtctactgaagaaaccgccaatggaggacgagcagaagcctctggatgacatgtat
gacaagaaggtaaactacatcggaaatcacacgggggtggacatcaaccgtgacctggac
tatgccaagaatggcaacggcaccaccagcggcattggcagcagcgtgggcaagtatatg
atcgacgaagaccacatgtcgttcatccacaacccaaacctgacagtttgcgtgcccatc
gccgtgggagagtccgactttgagaacctcaacacagaggacttcagcagcgagtcagac
attgagaacagcaaagagctggacgacaccagctcctcagaaggcagcaccatcgacatc
aagccagacgtagaggaggtggtggtggtggagacggtggaggaatacatggaaccagag
tcatgttggacagatgcttgcgtggccaagtataaatgctgcgacgttgacatcactatg
ggctgggggaagagctggtggttcctgaggaaaacctgctacctgatcgtggaacacaac
tggtttgagaccctcatcatcttcatgatcctcctcagtagtggggccctggcctttgag
gatgtgtacattgagcagaggaagaccattcggatcattttggagtatgctgacagggtt
ttcacctacatcttcatcctggagatgttgctgaagtgggttgcttatggttttgtcaag
tattttaccaacgcctggtgttggctggacttcttcattgtggatgtgtctatagtcagc
cttgtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggacacta
agggccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtcaac
gccttggtgggcgccatcccttccattatgaatgtgttgctggtctgcctcatcttttgg
ctgattttcagtatcatgggggtcaacttgtttgcgggcaagtactacttctgttacaat
gagacgtcagaggaaatgatttctgtcgatgtggtcaacaacaagacccagtgtgtggcg
cttatcaatgagaactttactgaggtcaggtggaagaacgtcaagatcaactttgacaac
gttggcgccggatacctcgccttgttgcaagtggccacattcaaaggctggatggacatt
atgtatgctgctgtggattccagagatgtggaagaccagcccgactatgaagtcaacatc
tatatgtacatctactttgttgtcttcatcatattcgggtccttcttcaccctcaacctc
ttcatcggtgtgatcattgacaacttcaaccagcagaagaaaaagtttggaggtcaggat
atcttcatgacagaggaacagaagaagtactacaatgccatgaaaaagctggggtccaaa
aaaccgcaaaaacctattcctcgaccacagaacaaggtccagggactggtgtttgacttt
gtgacacagcaagtctttgatatctccattatgatactcatctgcctcaacatggtcacc
atgatggtggaaacagatgatcagtcagaacaaacagaaaatgtcctctactgggtcaac
ttcatctttattgtagtcttcaccacggagttcctgctgaagctctttgccctgcgtcat
tattactttacaaatggatggaatatctttgatgtggttgtggtcatcctgtccattgtg
ggaatgttcctcgctgacatcattgagaagtactttgtgtccccgaccttgttcagggtg
atcagattggctcgtattggccgtatccttcgtctcatcaaaggagctaagggcatccgg
actctgctctttgccctaatgatgtccttgccagctctgttcaatattggcctgctgctc
ttcctggtcatgtttatcttctccatctttggcatgtccaactttggctacgtgaaacac
ggagcggggattgacgacttgtacaactttgaaacctttggcaacagcatgatcattctg
ttcatgatcaccacatctgccggctgggatggcttactgctgccaattctcaactaccca
ccggactgcgaccccaactttgagaacccgggtacttcagtgaagggcgactgtggtaac
ccctcagtagggatcttcttttttgtcatgtacataatcatttctttcctgattgtggtt
aacatgtacatcgccatcattctggagaacttcagcgtggccacagaggaaagtgctgac
ccactcagcgaggatgactttgaaaccttctatgagatctgggagaagtttgatcccact
gcctctcagtttatcagttttgccaagctgcctgactttgccgatgctttggagcacccg
cttcgcgtgccaaagcccaacaccatagaactaatagccatggacatgcccatggtgagt
ggtgatcgcattcactgcctggacatcctgtttgccttcacaaagcgtgtgctgggtgac
agcggtgagctggacatgctgaggacgcagatggaggagcgtttcgtggcagccaacccc
tccaaggtgtcatacgaacccatcaccaccacccttcgccggaaacaggaggatgtttcc
gccagaaccatccagaatgcctaccgatctcacctcatcagacgcggcatcatcttcaag
cgcattttgtccaataacaggctggagaatggagggaccaaccaagagaagaaggagagc
acaccgtccactgcttctctgccgtcgtatgacagcgtgaccaaacccgacaaagagaag
caggacaaaaacaaagaagaatgggcaaaaaaggagaaggacaagaatcaaaaagacgag
tgggaatccaagtgttag
DBGET
integrated database retrieval system
