Kryptolebias marmoratus (mangrove rivulus): 108245563
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Entry
108245563 CDS
T05608
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108245563 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
kmr04091
]
108245563 (frem1b)
Lectins [BR:
kmr04091
]
C-Type lectins
Lecticans
108245563 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
DUF5801
Motif
Other DBs
NCBI-GeneID:
108245563
NCBI-ProteinID:
XP_017288081
UniProt:
A0A3Q3BFK3
LinkDB
All DBs
Position
LG18:4979187..5005629
Genome browser
AA seq
2060 aa
AA seq
DB search
MSSMVAIGPSLLLFLVMTVCSRSLVLVNPGVQVLRGQSVFITKSDLNISVDPDTDCKVEV
AKNEPVTQRVGRLTPQMFDCRFLSDEVQYVHNGSPLLDQDLVMLRVYRLKSSDTLVETVA
LKVQVMDSGSRVVELGSTPLVVPQFFGLSNAIDSSVLTIRTLGDLVCTVRLMSSDTNIPA
AGRLVREDNLQRKGRQAAGFCPGNKPCLHDTTEVHFLKTSCQDFLSLGLKYQHLSPPSPQ
VDFIPIRVELREETTRTLLQSEAVWLPVLIHGAMQNQPPRANFMASFILEVDQFILTPLT
TDALDANDQETPQDQLVFNVTVPPAEGFITHLEDHTKPVQSFTWLDLNHMKVAYQPPNSS
QNHRRNYQVEFQVIDRSFLTSLPILVHLSIRVSETNAPRVSWNMGLNLLEGQSRPITWQE
LQIVDNDNIDAVYLVAVDGPLHGRLSVRGGKAFMFRVKDLKEGVVVYHHSDSDSTRDHIV
FRVSDGRHSIRHKFPINILPKDDSPPFLINNVAVEVQEGGAVRLQDYMLLASDLDSSDDH
ILYQTVSAPQAGQLVRKSSADRTAIPVDSFLQKDLIQGLIFYQHSGDEAFEDSFDFTLSD
SHQPPNLSQTYMVVVHVFPVKDQLPVEVPGTVRSLTVKETEVVYVTQNQLHFTDRENPDA
DLTFVITQSCFSPLNPGLMDAGRLFYTDSTSAMKKDHMVPVLKSFTQHAVTHMKVAFMPP
VEDIGPDPLFVQFVFSVSDHTGGTVSGLLFNITVTPVDNQAPEAFTNLLRVEEGGEAFVT
EEHFLVQDRDSPEEVLRVKVQSAARHGRLELQGKVLLQGDEFMLSDLRGLRLRYVHDDSE
TTEDEVGLKVLDGLNSADVVLQIQVLLVNDEPPRLGGGLRAQLSCDEGGRVQVTVDYLSA
TDRDSDDSRLTYMLARSPGRGELQRSGLMVDKFSQQDLLQGHVYYIHSGAEIGPNPVVDT
VTFIISDGEAGGTDSCCHGDAPPVPLHGTLPVYDLNVTILPVNNQVPSVTLGESMLLVDE
GASVCLCGAVLGASDPDSPPEELTFHLETPPLHGFLENMLPPPGSEKSNAGVRVEIFSLA
HLTSGFINYVQSEHKGMEPTVDQLSISVSDGLHSSAPIPLYIIITPTNDETPSLLLANFS
VMEGGMTELTLSILDGLDLDVPSDLLTFTVEHPPAHGRLINGIYGAEVSRYKEMDTEQLQ
RSLYITTFTLQELKQGMKIMYVHDDTETLEDTVLLRLTDGIHTVEGTARVTVLPVNDNKP
QLLKNAGLDVSSGEHRVISSLVLEAEDLDTPPDQVYYFLNAAPTLGRLQLKRETGWTELS
AGQNFTQDDVDMNRLWYKHTAGVKGPDSFRFILSDVDNKSPSQRFFISIHTVHKGDIMLQ
SNEVHLTEGQRVVLNTNNLLVSDLAGRPEELVFTVSVPPQHGLVHAVQQPGVPLLSFTQL
DVVAHRVCYTHNNEHDAETDSFSFIVTNGESSLSGTLLFTIQHGDRIPPTLNRNAGLQLQ
DGSTAAITSDLLQLTDPDTAATNLSYIITQLPRHGQLLLRGVLLSSPPTFFQTDVDQLNL
AYRHIPGSPGQIDKFYFLPSDGSNRGYLEFSQLRAEPAVFNIQVEQVDRTPPSLTSLQSP
STVVDLGSGRFGIFISSRNLQASDPDSSKEQLEFSISRPPQFGYLENAGTGVSIRSRFTQ
RDLDLRDVVFVIPTDQEMASDSLEFHLRDPAGNTSPSQRLDLFWSRVQLSASCYRTCETS
GMLQIQIQRSGKSMDPAYVSIQVENGSAKAGRDFTHSSAGLLQFDPGVNVKTWNIFLVDD
GLEENHETFSVLLKTPQNSVLGQRTSATVEILDPRGGRCDPESLKVEDHQPPPGGPRLPD
PHQPEEEDAVTDVEAELLWENQPHPPRGDVPNRRFSLDYREVEPQDQSALHYRETHLHRG
GQLGPTSESDRGSGSRGEGQKTARSIGSSCPDGWTFYRRRCYIISPSVASWASADRTCSQ
RFNSSLSSVRSRRDVSWMWRFTGKKPFWIGLSGGLDSWMWADGSAGSDCVLVENPRRWIP
TDCSPETQHSFVCSSPLQTL
NT seq
6183 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcatggttgccatcgggccatctctcctgctcttcctggtgatgaccgtctgc
agccggtctctggttctggtgaacccaggtgtgcaggtcctcagaggtcaatcagtcttt
atcacaaagtcagacctgaacatcagcgtagatccagacaccgactgtaaggtggaggtg
gcaaaaaacgagccggtgacccagagagtcgggaggttgactccacagatgtttgactgc
aggttcctgtctgatgaggttcaatatgtccacaatggcagtcctctactggaccaagac
ttggttatgttgagagtctacaggttgaagtcctcagacacgctggtggagacggtggcc
ctcaaggttcaggtgatggactcagggtctcgtgtggtggagctgggcagcacaccactg
gtggttcctcagttttttggtttgtccaacgccattgacagctccgttctgaccatcagg
actctgggagacctggtctgcactgttaggctgatgagcagcgacactaacatccccgcc
gctggtcggctggtccgagaggacaacctgcagaggaaaggcagacaggcggcagggttc
tgtcctgggaacaaaccatgtcttcatgacaccacagaggtccactttctgaaaaccagc
tgccaggacttcctgagcttgggtctgaaatatcagcaccttagtcctccatccccacag
gtggacttcatccccatcagggtagagctgagggaggagaccaccaggaccctgctgcag
tctgaggcggtgtggctgccagttctgattcacggtgccatgcagaaccagcccccccgg
gccaacttcatggcttcgttcatactggaggtggaccagttcatcctgacccccctgacc
actgatgccctggacgccaacgaccaagagacgccgcaggaccagctggtgttcaacgtg
accgtcccacccgcagagggattcatcacccacctggaagaccacacaaaacctgtccag
tccttcacctggctggacctgaaccacatgaaggtggcctatcagccccccaacagcagc
cagaaccaccgtaggaactaccaggtggagttccaggtaatagacagatcctttctgacc
agcctgcctatcctggtccacctctccatcagggtgtcagaaacaaacgcacccagagtc
tcctggaacatgggtctgaacctgctggagggtcagtctcgaccaatcacatggcaggag
ctgcagattgttgacaacgacaacattgatgctgtttacctggtcgctgtagacggacct
ctgcatggacggctcagtgtcagaggtgggaaggccttcatgtttcgtgtgaaggacctg
aaggagggcgtggtcgtttatcaccactccgacagcgactccacccgtgaccacattgtt
ttccgcgtcagcgacggccgccacagcatccgacacaagttccccatcaacatcctgccg
aaggacgactccccaccgttcctcatcaacaacgtggcggtggaggtgcaggagggcggg
gccgtgcggctccaggactacatgctgctggcctctgacctggactccagtgacgaccac
atcctgtaccagacagtctccgccccccaggctgggcagctggtcaggaagagctccgcc
gacaggacagctataccagtggacagcttcctgcagaaggacctgatccagggtctgatt
ttctaccagcactcaggagatgaggcgttcgaggactcctttgacttcacgctgtctgac
agccaccagccacccaatctctcacagacatacatggtggtggtccatgttttcccggtg
aaggaccagctgccggtggaggttcctggcacagtccggtctctgactgtgaaggagacg
gaggtggtctacgtcacacagaaccagctgcacttcacagacagagagaacccagacgct
gacctgaccttcgtcatcacacagtcctgcttcagcccactgaatcctggactgatggac
gcaggacgtctgttctacactgacagcaccagcgccatgaagaaggaccacatggttccg
gtgttaaagtccttcactcagcacgcagtgacccacatgaaagtggccttcatgcctccc
gtggaggacattggacccgaccctctgtttgttcagtttgtcttctctgtcagtgaccac
accgggggaactgtctctggcctgctcttcaacatcaccgttacccctgtggacaaccag
gcccctgaggctttcaccaatctgctgcgagtggaggaaggtggagaagcctttgtgaca
gaggaacacttcctggttcaggatcgggacagtcctgaggaggtgctgagggtgaaggta
cagagtgcagcccgtcatggtcgtttggagctgcagggcaaggttctgctgcagggagac
gagttcatgctgtcggacctgagaggactgcggctcaggtacgtccacgatgactctgag
accactgaggatgaggtgggtctgaaggtgctggatggtctgaactctgccgacgttgtg
ctgcagattcaggtcctgctggtgaacgatgagcctccccggctgggtggcggtctgcgg
gcccagctgagctgtgacgagggggggcgggtccaggtgacggtggattacctgtcagcc
acagaccgagacagcgacgactccagactgacctacatgttggcccgaagtcccggcaga
ggggagctgcagagatctggactgatggtggacaagttctcccaacaggacctgctgcag
ggtcacgtctactacatccactcaggtgcagagattggtccaaaccccgtggtcgacacc
gtcaccttcatcatctctgatggcgaggcaggagggacggatagctgttgccatggagat
gccccgcccgttcctctccacggcacacttcctgtttacgacctgaacgtcacaattctt
cctgtcaacaaccaggttccctccgtcactctgggtgagtccatgttgctggtggatgaa
ggagcctccgtctgtctgtgtggggcggttctaggagcctcagacccagacagccccccc
gaggagctgacctttcacctggagactcctccccttcacggctttctggaaaacatgctg
ccgccgccgggttcggagaagagcaacgctggagttcgggtcgaaatatttagcctcgcc
cacctgacctccggcttcatcaactacgtccaatcagagcacaaagggatggagccaact
gtagaccagctgtctatcagtgtgagtgacgggctgcatagctccgcccccattccattg
tacatcatcatcaccccgaccaatgacgagaccccttcgctgctgcttgccaacttcagc
gtcatggagggtgggatgacagaactgactctgtccatactggacggcttggacctggac
gtcccctcagacctcctcactttcacagtggagcatccgccagcccatggcagattgatt
aatggcatttatggagcagaggtgagccgatacaaggagatggacactgagcaactgcag
aggagcctctacatcaccaccttcaccctgcaggagctaaaacaaggcatgaagatcatg
tatgtgcacgatgacacagaaaccctggaggacaccgtgctgctgcggctgacagatggc
atccacacggtggaggggacggctcgggtcactgtgctgccggtcaacgacaacaaacca
caactgctcaagaacgctgggctggatgttagttctggtgagcacagggtgatctccagc
ctggttctggaagctgaagacctggacacgcccccagaccaggtgtactacttcctgaat
gctgcaccgacattaggaagactgcagctgaagagggaaacaggttggaccgaactctca
gctggtcagaacttcactcaggatgacgtggacatgaaccgcctgtggtacaaacacacg
gctggggtcaaaggtcccgacagctttcgtttcatcctcagcgatgtggacaacaagtct
ccgtctcagaggttcttcatctccatccacacggtacacaaaggtgacatcatgctgcag
agcaatgaggtacacttgacggaggggcagcgggtcgtcctcaacaccaacaacctgctg
gtgtcagacctggcgggtcggccggaggagctggtcttcacagtttcggtcccacctcaa
cacggccttgtgcacgccgtccagcagccgggagtcccgctgctcagcttcacccagctg
gatgtggttgctcaccgagtgtgctacactcacaacaatgagcatgacgcagagaccgac
tcattcagttttatcgtcacaaacggtgagtcgtccctgagcggcacgcttctcttcacc
atccaacatggcgaccgtatcccaccaaccctgaaccgtaatgccggcctccagctgcag
gatggttccaccgccgccatcacctccgacctgctgcagctcaccgaccccgataccgct
gccacaaacctgagctacatcatcacccagctgcccagacacggtcagctgctgctgagg
ggagtcctgctctcctcaccacctacatttttccagaccgatgtggaccagctgaacctg
gcgtaccgacacatcccgggaagcccaggacaaatcgacaagttctacttcctgccgagc
gacggaagcaacagaggatacctggagttcagccagctgagggcggagcctgcagtgttt
aacatccaggtggagcaggtggaccggacccctcctagtctgaccagcctgcagagtccc
agcaccgtggtagatcttggttccggacggtttggcatcttcatcagcagcaggaacctg
caggcctcggaccccgacagttcaaaagaacagctggagttctccatcagcagaccgcct
cagtttggttacctggagaacgctggcacaggagtctccatcagaagccgttttacccag
cgagacctggatctgagggacgtggtcttcgtcatcccgacagaccaagagatggcgtct
gacagcttggagttccatctcagagacccggcaggaaacacttctccttctcagagactg
gatctgttctggtcccgggtccaactgtcagcgagctgctacagaacctgtgagacctca
gggatgctgcagatccagatccaacgaagcggaaagagcatggacccagcctacgtctcc
atccaggtggagaacgggtcggccaaagcaggcagagatttcacccacagctcagctggt
ctgctccaatttgacccaggtgtgaatgtgaagacctggaacatcttcctggttgacgat
ggtctggaggaaaaccacgagacctttagtgttttgctgaaaacccctcagaactcggtt
ctaggacagagaacgtctgcaaccgtggagatccttgatcccaggggaggaaggtgtgat
ccagaaagcctgaaagtggaggaccaccagcctcctcctggtggtcctcgcctccctgac
ccccatcagccagaggaggaggacgctgtcaccgatgttgaggctgaacttctgtgggag
aaccagccccaccctcccagaggagacgtcccaaaccgccggttctccttggactacaga
gaggtggagccacaggaccagtcagccctccactatagagagacccacctccacaggggg
ggtcagctgggaccgacttctgagagtgatagaggttctgggtccagaggagaaggacag
aagacagcccggtccattggcagctcgtgtcctgatggttggacgttctacaggagacgc
tgttacatcatcagtccgtctgtggccagctgggccagcgccgacagaacctgctctcag
cgcttcaacagcagcctgagcagcgttcgctccagaagagacgtcagctggatgtggagg
ttcacggggaagaaaccgttctggattggtctgtctggaggtctggactcctggatgtgg
gctgatggttctgctggctcagactgcgtcctggttgaaaaccccagaagatggattcct
acagactgttcacctgaaactcagcattcgttcgtttgctcttctcctcttcagactctt
tga
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