Kryptolebias marmoratus (mangrove rivulus): 108245630
Help
Entry
108245630 CDS
T05608
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X5
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04010
MAPK signaling pathway
kmr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108245630 (cacna1ba)
04020 Calcium signaling pathway
108245630 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108245630 (cacna1ba)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108245630 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
108245630
NCBI-ProteinID:
XP_017288189
LinkDB
All DBs
Position
LG1:complement(4062427..4231252)
Genome browser
AA seq
2351 aa
AA seq
DB search
MARFEDEPSSRYGGSCPAGPPRAGASRQPGPPGGQRMYKQTMAQRARTMAIYNPIPVKQS
CLTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPASDKTPLS
ERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFD
LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMG
RFHLTCFRIDTNERAADFPCGNEAPARTCSNGTICRDYWLGPNFGITNFDNILFAILTVF
QCITMEGWVDILYNANDATGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEK
RQEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSLDGAWYKRKHNNSVLKR
AKKSKNDLINAEEGSPFARASVKSKNENSSYLRRKEKRIRFTIRRLVKSQTFYWTVLCLV
GLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLVEMSMKMYGLGPQNYFHSSFNCFDFG
VIIGSIFEVIWAAMKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISL
LFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTGEDWNAVMYHG
IESQGGVHGGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAINKK
LALQKAKEIKEVSPMCAANISLTAFLTRRRGIALSSSSSISSVNSLSYVCTPVHHYLSKE
QQRPMKTMSMWEQKASQLRKQNQASCEALYEPDESDCLPSALHIRPDMKTHLDRPLVVGH
CDGPLLGGHQHHCHKPCTSEEAETAADPLPTSHHSRRHHRHRDRDRAKVKDETNDNCEGG
KDRKHHVHHSRSKDQDSSRGKEEKSERSRSREGGRKHYHHQSSVNDSAGGGVTSEREHCH
HHSHRQSRGGNGTVSSGGRGERRSRHKDGSNRDGDSRANGERRRHRTHASRGQSKDEGEE
SNERENIHTNRFGDSEGESSQQQGSGGTPGHPEDSDNQRNVRRTGQTSVPIPPVTVTSPP
GEITHLQMNSIDCETVPMNEKTLEDQCQPGPRPILPHSSMFIFGQTNPVRRLCHYIVTLR
YFEMSILVVIAMSSIALAAEDPVWTNAPRNNVLKCLDYAFTSVFTFEMVIKMVDLGLLLH
PGSYFRDLWNILDFIVVSGALVAFAFSGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKA
VFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKTLEKDCKGQFLDYD
KDEVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGYRI
EMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLT
RYMPEDTQSFQYRMWKFVVSAPFEYSIMIMIALNTVVLMMKFHGAPDYYDAMLKYLNIVF
TTLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINTTDRLLNLSFLRLF
RAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIDLNEDT
AINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRPCDELSGTHGKDCGSDFAYFYF
VSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLD
MYQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLAS
GIVVQRLLDAELKKELSTVWPNLSQKTLDLLVTPHKPNELTVGKVYAALMIFDYYKQNRA
RRLQLQQQNTSGPQCKVGALFKPLLPLTHMQGSPSLLQPQPKSSSPQRVASSNSINNGGM
LPGYDPRPKPTSSWETEKPKEVSRDKTKRSMSKGPSEDKTDTALNQVSVEMKKMESSVNS
TIAVPGSGLESQGRAASMPRLSAEVQQSHSHYSPGTLLPSATDTSLMTRSASTVAPQRPQ
EVNLRDYTLEKPRQERSHHHHHHHHRCHHRRDRDRDRDKDRDREKRQRSLDTPVGGQPSS
LAGAAGEPGSEPAASKERAHNRGRSHERKHHHSSADKQRYYSCDRYCSRDHCTTKSATAS
CAASPSEEQETSSKQGSGWVKGSPAAPSSGSSTPSRGRRQLPQTPLTPRPGVAYRTAYSS
PVHLVSSQASLSPGRLSRGLSDHNALRHSGSHHFPCPVTRISSEPFLGQGYGEALSSPYG
SFQDQLDVFQDAASLSPSPSAERSSRTTLPRTMGALLPTLGVDPAVPNGYHLSIGGSTSP
GSGNRALRYRR
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgaagacgaaccgtccagccgctacggaggcagctgccccgcggggccg
ccccgagccggggccagccggcagccggggcctccggggggccagaggatgtacaagcag
accatggcccagagagccaggactatggctatttacaacccgatccccgtcaaacagagc
tgcctcaccgttaaccgctctctcttcatcttcagcgaggacaacatcatccggaaatat
gccaaaaagatcaccgaatggcctccatttgagtacatgatcctggctaccattatagca
aactgcatcgtgctggctttggagcaacacctaccagcctcagataaaaccccgctgtcg
gaacgtttggacgacacagaaccctactttattggaatattttgttttgaagctggaatc
aagatcattgccctgggctttgcttttcacaaaggctcctacctacgtaatggctggaat
gtaatggactttgtggtggtcctaacagggatcttggccacggtgggagctgactttgat
ctgaggacgctgagagcagtgagagtcctgcggcccctcaaactcgtctctggcattcca
agtcttcaagtggtgttgaagtccattatgaaagccatggtgcctctgctacagatcggc
ttgctgctcttctttgccatcctcatgttcgctatcatcggcctcgacttctacatgggc
aggttccatctcacatgcttcaggattgacacaaacgagcgggcagcggatttcccctgt
ggcaacgaggctccggcgaggacctgtagcaacgggacaatctgtagggattactggctt
ggacctaattttgggatcaccaattttgacaacatcctttttgccattctcaccgttttt
caatgcatcaccatggaaggatgggtggacatcctctacaatgccaatgatgccacaggg
aacacgtggaactggctgtacttcatccccctcattattattggttccttcttcatgctc
aacctggtgctaggtgtcctgtcaggggaatttgcgaaggaaagggaacgtgtggagaag
aggcaggaattcttgaagcttcgccgacaacagcaaattgaaagagagttaactggttac
ctggagtggatctgcaaagcagaggaagtgatgctagctgaggaagacaaaaatgcagag
gaaaaatcgctggatggagcgtggtacaaaagaaaacacaacaactctgtgctgaaaagg
gcgaagaagagtaaaaatgacctgatcaatgcagaagaagggtccccgtttgcacgggcc
agtgtgaagagcaagaatgaaaactcatcttacttgaggaggaaagagaaaaggattcgc
ttcaccatccgccgtctggtcaagtcccagaccttctactggactgtgttgtgtctggtt
ggcctcaacacgctgtgtgtggccatagtacactatgaccagcctgagtggctcacttat
gctctttatctggctgaatttgtattcctgggcttgttcctggttgagatgtccatgaaa
atgtatggcctcggaccccagaattattttcactcctctttcaactgttttgactttggg
gtgattattggcagtatttttgaggtgatctgggctgcaatgaaacctggtgcctcattt
gggatcagtgtccttcgagcactaagactcctccggatcttcaaagtcaccaagtactgg
aactctttgaggaacctggtagtatcactgctcaactcaatgaagtctattatcagtctg
ctgttcctgctcttcctcttcattgttgtcttcgctctgctgggcatgcagctgttcggt
ggacagtttaattttgaagatgaaacaccaacaaccaactttgacacattcccagcagcc
attctcacagtgttccagatcttgacaggggaggactggaatgcagtcatgtaccacggg
attgaatcacaggggggggtgcatgggggaatgttctcctccatttattttattgtcctc
actctctttggaaactacacactcctaaatgtatttttggccattgctgttgataacctt
gcaaacgcccaggagttgactaaggatgaggaggagcaggaggaggccatcaataagaag
cttgctctccagaaggccaaggagataaaggaggtcagccccatgtgtgctgctaacatt
tccctcacagcttttctaacacgcagacgaggtatcgcgctctctagcagctcatccatc
agcagtgttaactcactgagttatgtctgcaccccagtccatcactacctgagtaaagag
cagcagaggcccatgaaaacaatgtcaatgtgggagcagaaagccagccagctaaggaag
caaaaccaagcgagctgcgaggctctgtatgaaccagacgagtcggattgcctgccctca
gccctccacatccgccccgacatgaagacccacctcgatcggcccctggttgttgggcat
tgtgatgggcctttgctgggtggccatcagcatcactgtcacaaaccctgcacatcagag
gaagctgagactgctgctgacccactccccacttctcaccattctcggcgtcatcaccgc
caccgcgacagagacagggccaaagtaaaagatgagaccaatgacaactgtgagggtgga
aaagacagaaagcaccacgttcatcacagccgctccaaagaccaggactccagtcgaggc
aaagaggaaaaaagtgagcggtcccgcagtagagaagggggcaggaaacattatcatcat
cagagttcagtgaatgacagtgcaggtgggggggtcacaagtgagagagagcactgccat
catcattcacatcgacagtccagagggggaaatggaacagtgagcagtggaggaagagga
gagcgaagatcccgccacaaagatgggtctaacagagatggtgacagcagggccaatgga
gagaggaggaggcatcgcactcatgcctccaggggccagtccaaagatgaaggagaggaa
tccaatgagagagagaacattcatacgaacaggtttggtgactctgagggagagtcctcc
cagcagcagggctctgggggtacacctggccacccagaggactcagacaaccagagaaat
gtcagacgaacaggccaaacctccgtccccattcctcctgtgaccgtcacctctccacca
ggagaaattacccatttacaaatgaacagtattgactgtgaaacggtgcccatgaatgag
aagaccttggaggatcaatgtcagcctggacctagacccatcttgcctcacagttcaatg
ttcatctttggacaaaccaatccggtgaggcggttatgtcactacattgtgaccctgcgg
tattttgagatgtccatcctggttgtcattgcaatgagcagcattgccctggcggcagag
gaccctgtctggacaaatgctcctcgcaacaatgtactcaaatgtctggactatgccttc
actagtgttttcacttttgaaatggtgatcaaaatggtggacctgggcctgctgcttcat
cctggatcgtacttcagagatctctggaacattttggactttatagtggtcagtggggcg
ctggtggcatttgcattttcggggactaaaggcaaagacatcagcaccatcaagtccctg
agggtcctacgagttctcaggcctctcaagaccatcaaacggctgccaaaactaaaggcg
gtgtttgactgcgtggtcaactctttgaagaacgtactgaacattctcatcgtttacatc
ctcttcatgttcatttttgctgttattgcagttcagctattcaaagggaaattcttctat
tgcactgatgagtccaaaaccctggagaaggactgcaaaggacaattcctagactatgat
aaagatgaggtggcagcaatgcccagagagtggaaaaaatacgagttccattatgacaat
gtgctgtgggcatttctgactctcttcaccgtctccacaggggagggctggccaactgtt
ttgaagcactctgtggacgccacctttgaagaccagggccccagtccaggctaccggata
gaaatgtccatcttctatgtggtctactttgtggtcttccctttcttctttgtcaacatc
tttgttgctttgatcattatcaccttccaggagcagggagacaaggctctgtctgagtgc
agcttggaaaagaacgagagggcttgtattgactttgccataaatgccaaacctttgacc
cggtatatgcctgaggacacacagtcattccagtacaggatgtggaaatttgttgtgtca
gctccgtttgagtactccattatgattatgatcgctctcaacacagttgttctcatgatg
aagttccatggagctccggactattatgatgcaatgctcaagtacctcaacatagtgttc
accactctcttctctcttgagtgcatcctcaagatcattgcttttgggccactgaattat
ctgaaggatgcctggaacgtgtttgactttgtgacagtgttgggcagcatcactgacatc
ctggtaactgaaatcaatactacggacaggctgctgaatttgagcttcctgaggcttttt
cgagccgctcgcctcatcaagctgctgaggcagggctacaccatccgcatcctgctgtgg
accttcgtccagtcttttaaggctctgccgtatgtttgtctgctgatcgccatgctgttc
tttatatatgccatcattgggatgcaggtgtttggtaacattgacctgaatgaagacaca
gctatcaaccaccacaacaacttccgcactttcctccaggcgctcatgctgctgttcagg
agtgcaaccggagaggcctggcacgagatcatgttatcttgtctgagccatcgaccgtgc
gacgagctgtctgggacccatgggaaggactgcggcagtgattttgcctacttctacttc
gtctcctttatattcttgtgttccttcctgatgctgaacctgtttgtggctgtcataatg
gataactttgagtaccttaccagagactcctctatcctgggacctcatcacctcgatgag
tttatccgggtttgggccgagtatgaccccgctgcttgtggccgtatcaagtacctcgat
atgtatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgtccacca
agagtcgcctacaagcgccttgtcaaaatgaacatgcccattgctgatgacaacacggtt
cacttcacctccaccctgatggccctgatacgcactgcgttggagataaaactggcctca
ggaatagtggtccagcgattattggatgctgagttaaagaaagaattatccacagtgtgg
ccaaatctctctcagaaaacattggatctgttggtgacgccacacaaacccaacgagctg
acggtaggaaaggtctacgcagcgctgatgatcttcgactactacaaacagaatcgagca
aggaggttgcagctgcagcaacagaacacatcaggcccccagtgcaaggtcggggctctg
tttaagccattgctgcctctgactcacatgcagggctcgcccagccttcttcagccccag
ccaaaatccagttcacctcagcgggtggccagttcaaactccatcaacaatggaggcatg
ctgccagggtatgatcccagacccaaaccaacatcttcctgggaaacggagaagcccaaa
gaagtttcccgtgataaaacaaagagatccatgtccaagggtccatcggaggacaaaaca
gacactgcccttaatcaggtgtccgtagagatgaagaaaatggagtccagtgttaacagt
actatagctgttcctggttcaggtttggagagccagggtagagccgcttccatgcctcgg
ctcagtgctgaagtccagcagagtcactcccactattctccagggactcttctaccttct
gccactgataccagccttatgactcgttcagcctccaccgtggctccacagcgtccccag
gaggtcaacctgagggactacactctggagaaacctcgccaggagcgaagccaccaccat
caccaccaccaccaccgctgccaccaccgcagagaccgagacagagacagagataaagac
cgggacagagagaagaggcagaggtctctggacacccctgtggggggtcaaccttccagt
ttggctggcgcagcaggtgagccgggatctgaaccggctgcttccaaagagcgagcccac
aaccgaggacgctcccacgagaggaaacatcatcactcctctgcagacaagcagcgctac
tactcctgtgaccgctactgcagtcgggaccactgcaccacaaaatctgccaccgccagc
tgtgctgcctcccccagcgaggagcaggaaaccagcagcaagcagggtagtggttgggtt
aaaggcagcccagcagcaccgagctccggttctagcacaccaagccgtggacgtcggcag
ctcccacagacccctctcactccacggcccggggtggcatacaggactgcatattcctcc
ccggtgcaccttgtgtccagccaggcctctttgagtcccggccgactaagccgcggcctg
tcggaccacaacgccctccgtcacagtggttcccaccatttcccttgccctgtcactcgg
atcagctcagaaccctttctgggccagggctacggcgaggccctgagcagcccttatggc
agcttccaggaccagttggatgtcttccaggatgcggcatcactgtccccaagtcccagt
gctgaacgctcatctcggaccacactgcctcgcacgatgggagccctacttccaactctt
ggtgtagaccctgctgtacccaacgggtaccacttaagcatcgggggaagcactagccca
ggctctggcaatagagcactgaggtacaggaggtag
DBGET
integrated database retrieval system
