Kryptolebias marmoratus (mangrove rivulus): 108246012
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Entry
108246012 CDS
T05608
Symbol
smg5
Name
(RefSeq) protein SMG5 isoform X2
KO
K11125
protein SMG5
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108246012 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108246012 (smg5)
03032 DNA replication proteins [BR:
kmr03032
]
108246012 (smg5)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108246012 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
108246012 (smg5)
DNA replication proteins [BR:
kmr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
108246012 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
108246012
NCBI-ProteinID:
XP_017288821
UniProt:
A0A3Q3B626
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All DBs
Position
LG16:complement(1677234..1690751)
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AA seq
1124 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPMSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVETEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDT
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPTHGGAHHCPSEEEEEQQQHTDSSCPVLPDNLIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLHTD
AADDLEIRDLSAQPVVRSDEKPLQNGSLEQEDEEDKDEDGCERVGGKKQSSEEDPQKMGE
EKQRQKKKYTRLSRLRRRRCAHKSGRGEDESDLSEGFESEEDEDDDVDGMERADSTGGTT
VEESLNPSSVKKETKRDPLGEEGSWGSGSEEEEEEEGGTAFDVETDSDMNSQESRSDLED
MEDAENSENVVGQAPENPEEEEDEEHPKDGGGERDGETPPATNGPLMPSDSSISSNLQAM
SSQLFQAKRCFRLAPTFSNLLLRPQASSSSGIPTPTDTSAPPSQETPPPPGVLQCELNPG
TANGTNENDLDSDSEGSQHSAQSAHSEKTLLERLEILTNQGLMQVVKVFIDWLRTNTDII
LMCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLNAEVTEMLNECEQPGLVQTLLLPEDV
ALRHLPALHVAHRRLDFTRRSSSLSPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGI
FTSISQTEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSS
MSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLESE
FRKGNRYIRCQKESGRSFEKDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTI
LTGQEVEELCSQSAAMKSAIQAASLAGMELKNIVEFYRQWKEIG
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccggggcaggacagcgaaccagaggcgaaagtccttctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgtcatcatcggcagcaaatcatct
tacagagaggtcttcaagccggagaacatcagcctgcgcaacaagctgagggagctttgt
gtgaaattgatgtttcttcatcctgtcgactacggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggtcatcaagacgaacaagaagcacatccacagt
cgcagcgctctggagtgtgcctacagaacgcacctcatcgctggtgtgggtttttaccaa
cacctgctgctctacatccagtcccattaccagctggagctgcaggactgcatcgactgg
acccacgtcacagatccgctcatcggccgaaagaaacccatgtcggcctcccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctggctcgg
taccagaatgaacttgctggagttgagaccgagcagctggcagagaggttttaccatcaa
gccctgtctgtgatgcctcatgtcggaatgccttttaaccagctggggacgctggctggg
agcaaattctacaatgttgaagcaacctactactacttacgttgcatccaatcagatact
ccgtttgagggggcctatggcaacctgaagcgcctgttcgacaaagctgcaaagatgtac
caccaggtgaagaagcaggaaatgaagaagctgtctccgtctcgacaaagatccaaagac
ataaagcgcctcctggtgagcttcatgtacctccagagcctgctgcagcccaagaacagt
ttgatggagacggagctgacgtcgctctgccagtcggtgctggaggacttcaaccttgtg
ctcttttaccttccacctccaacacatggaggtgctcaccactgccccagcgaggaagag
gaggagcagcagcagcacacagacagctcctgtcctgttctgcccgataacctcatcttc
aagatggtcgtcacgtgtctgatggtggtgcacagccttaagaggggaggttcaaagcag
tacagtgcatccatagcttttactctggccctgttctcccaccttgtgaaccacgtgaac
atccggctgcaggctgaactggaggaaggagagagccaagtgcctccgcttcacactgat
gctgcagatgatctggagattcgggatttgtcagctcaaccggtggttcgttctgatgag
aagcctcttcagaacggctctctggaacaagaggatgaggaggacaaggatgaagatggg
tgtgagcgcgttggcggcaagaagcaaagcagtgaggaagatccgcagaagatgggcgag
gagaaacagaggcagaagaagaagtacactcgcctctctcgtctccgccgccgccgctgt
gctcacaaaagtggccgaggggaggacgaaagcgatctgagcgaagggtttgagagcgaa
gaagatgaggatgatgatgtggacgggatggagcgtgcggattcaacaggtggaaccacc
gtggaagaatcgctcaatccttcatctgtcaagaaggagactaagagagaccccttaggg
gaggaaggcagctggggaagtggttcagaggaagaggaggaggaggaaggaggaacagca
ttcgatgtggagacagactccgacatgaacagccaagagtctcgctcagacctggaagac
atggaggacgcagaaaactctgagaatgtggtgggtcaggccccggagaacccggaagaa
gaggaagatgaagagcaccccaaggatggaggaggagagcgggatggcgagacccccccg
gccaccaacgggcccctcatgccgagcgactccagcatcagcagcaacctgcaggctatg
tcctctcagctcttccaggcaaaacgctgctttcgtctggctccgacgttcagcaacctg
cttctgagaccccaagcctcatcttcatcgggtattcccacccccacggacacctctgcg
cccccctcccaggagactccacctcctcctggggttttacagtgtgagctgaaccctggt
actgccaatggaaccaatgagaatgacttggactctgactcagaaggaagtcaacacagc
gctcagtctgcacacagtgaaaaaactctcctcgaaaggctggagatcctgaccaatcag
ggactgatgcaggtggtgaaggtctttattgattggctgaggactaacacagatattatc
ctcatgtgtgcacagagttctcagagcttgtggaaccgtctgtctgtcctgctgaatctg
ctcccagatggcagcaagatgctcgaggctgagctgggactgaatgcagaggtgacagaa
atgttaaacgagtgtgagcagccgggtttggtccagactctgctgctgcctgaggacgtg
gctctgcgacacctgcccgctctccatgtagctcaccgccgccttgatttcactcgccgc
agctcctctctcagtcccctgcaggagtgtgtcgttcgagtgtgttgtattcgcagtttc
ggccacttcctaacaaatctccaaggcaacgttctgcacttcaacccagaagcaggaatc
tttaccagcatcagccagacggagcaggacaacctggtccagcaggccaaggcccagttc
aggatggctgaagaggaggctcgtcgaaatcgattaatgagggacatggcccaacttcga
ctgcagttggaggtgtcacagctagagggcagccttcagcagccgaaagctcagtcgtcc
atgtccccctacctggtaccagacaccgccgccctctgccagcatctgaatctcatccgg
cagttggctggcagcggctgcttcatcatcatcatcccacgaacagtgattgacggactc
gacaggttaaagaaggaaaatgctggagccagagacggtatccgtttcctggagtctgag
tttcgtaaaggcaacaggtacattcgctgccagaaggagtcgggtcgcagttttgaaaag
gataaactgaagcgtcaggatatcgaagcctggcatttgtacaagatggtggacagctgc
cgtcagctaacggtctcccagagcaacggagacgaggacacagccggcatggtgaccatc
ttaacgggccaggaggtggaagagctttgctcccagtcagcagcgatgaagtcggcgatc
caggcagctagcttggcaggcatggagctgaaaaacatcgtggagttttaccgtcagtgg
aaggagatcggctga
DBGET
integrated database retrieval system
