Kryptolebias marmoratus (mangrove rivulus): 108246040
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Entry
108246040 CDS
T05608
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108246040 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108246040 (prpf8)
Spliceosome [BR:
kmr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108246040 (prpf8)
Complex C
U5 SnRNP specific factors
108246040 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108246040
NCBI-ProteinID:
XP_017288866
LinkDB
All DBs
Position
LG2:14416086..14431073
Genome browser
AA seq
2355 aa
AA seq
DB search
MAAPFPYRGVPPGMPPGVPPVVVPQVLPPGLPPIVPPPAAVPDYMSEEKLQEKARKWQQL
QAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVL
KLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDSEEDSSVADWFYEHQPLKDTTKFV
NGTTYRRWQFTLPMMSTLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFE
PLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFI
KTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTAN
GIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALK
HRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQY
IFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFF
MRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEG
IKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRER
IRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESR
RFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWI
KPADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRFEKMYEKIDLTLLNRLLRLI
VDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASE
MAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDP
NNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSK
DNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRF
HNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIK
IGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHE
EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAITQNRRLTLEDLEDSWDRGIPRIN
TLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGG
VEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSP
TINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQE
LDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKY
WIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFP
GGKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFV
DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWK
TAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVE
KFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTT
ITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS
QQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISA
ANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVK
EIRCIVMVPQWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIM
ADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQ
MLLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASL
QEGEIYNADREDMFA
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccttttccctacagaggggtccctccagggatgccaccaggtgtgcctcca
gttgttgtcccccaggttctccccccaggccttccaccaatcgtcccccctcccgcagct
gtcccagactacatgtctgaggagaaactgcaggaaaaagcgaggaaatggcagcaactg
caggccaagcgctacgcagaaaagagaaagttcggcttcgtggacgcccagaaggaggac
atgccgcctgaacatgtccgcaagattatcagggaccatggagacatgaccaacagaaag
tttcgccacgacaagagggtctaccttggcgccctcaagtacatgccccacgcagtgctg
aagctgctggaaaacatgccgatgccctgggaacaaatccgagatgtccctgtgctctat
cacatcactggagccatttcctttgtgaatgaaatcccttgggtcatagagcccgtctac
atcgctcagtggggcgccatgtggatcatgatgcgtcgcgagaagcgcgaccggcgccac
ttcaagaggatgcgctttcctccgtttgacgacgaggagccgccgctggactacgctgac
aacatccttgatgtggagcctctggaggccatccagatggagcttgactctgaggaggac
tcctccgttgcagattggttctatgagcaccagcccctcaaagacaccaccaagttcgtg
aacggcaccacttaccggcgctggcagttcacgctgcccatgatgtccacgctgtatcgt
ctggccaatcagcttctgacagacctggtggattttaattatttctacctgtttgacctg
aaggcttttttcacatccaaggccttgaacatggccatcccaggaggaccaaagtttgag
ccgctggtcagagacattaacctgcaggacgaagactggaacgagttcaacgacatcaac
aaaatcatcatccgacagcccatcaggacagagtacaaaattgctttcccctacttgtac
aacaacctcccacatcacgtgcacctcacctggtatcacacaccaaatgtggtatttatc
aaaactgaggatccagatcttcctgccttctactttgacccactgatcaaccccatttct
cacagacattctgtcaagagtcaggagcccctccccgacgatgatgaggagtttgagctt
cccgagtacgtggagcccttcctcaaagagactccgctctacacggacaacacagctaac
ggcatcgccctgctttgggctccaagacccttcaatctccgctctggccgcacaaggcgc
gccatcgatatccccctggtcaagaactggtatcgagagcattgccctgcaggacagccg
gtgaaagtgcgtgtttcgtaccagaaactgctgaagtactacgtgctcaacgcactcaaa
catagaccgcccaaggctcagaagaagaggtatctgttccgctccttcaaagccacgaag
ttctttcagtccaccaagctggactgggtggaggttggcctgcaggtgtgcagacagggc
tacaacatgctcaatctgctcattcaccgtaagaacctcaactacctgcatctggactac
aacttcaacctgaagcccgtgaagacactgaccacaaaggagcgtaagaagtccagattt
gggaacgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtggtggacagc
cacgttcagtacaggctgggaaacgttgacgctttccagttggccgacgggctgcagtac
atcttcgctcacgtgggtcagctgaccggcatgtatcgctacaagtacaagctgatgagg
caaatccgcatgtgcaaagacctgaaacatctcatctactaccgcttcaacaccgggcct
gtgggcaaaggtccaggttgtggcttctgggctcctggctggagagtgtggctcttcttc
atgaggggcattactccgctgttggagaggtggctcgggaatctcctggccaggcagttc
gaagggcgtcactcaaagggtgtggccaagacggtgaccaaacagcgtgtggagtcccac
tttgatctggagctgcgtgccgcagtgatgcacgacatcctggatatgatgcctgaggga
atcaagcagaacaaagccaggactatcctgcagcatctcagcgagtcctggaggtgctgg
aaagcaaacatcccatggaaggtccctggcctccctactcccattgagaacatgatcctg
cggtacgtgaaggccaaagccgactggtggaccaacacggctcactacaaccgtgagcga
attcgtcggggagccaccgtggacaagactgtgtgcaagaagaatctgggcaggctgacc
cgtctgtacctgaaagctgagcaggaacgacagcacaactatctgaaggatggtccctac
atcacagcagaagaggctgtggctatttacaccaccacggtgcactggctggagagtcgg
cgcttctctcccatacctttcccccctctgtcctacaaacatgacaccaagctgctgatc
ctggccctggagaggctcaaagaggcgtacagtgtgaagtctcgcctgaaccagagtcag
agggaggagctggggctgatcgagcaggcctacgacaacccccacgaggctctttccagg
atcaaacgtcacctgctcacccagagagcgttcaaggaggtcggtatcgagttcatggac
ctgtacagccaccttgtgccggtgtacgatgtggagcctttggagaagatcacggacgcc
tacctggaccagtacctgtggtacgaggcggacaagagacgccttttcccaccctggatc
aaacctgccgacaccgaaccgccacccctgctggtgtacaagtggtgccaaggcatcaac
aacttgcaggacgtgtgggaaactgcagagggagagtgcaacgtgatgctggagtctcgc
tttgagaaaatgtacgagaagatcgatctgacgctcctcaacaggctgctgcgtcttatt
gttgaccacaacatcgctgattacatgacggccaagaacaacgtggtcatcaactacaag
gacatgaaccacaccaactcttacggcatcatcagggggctccagttcgcctcgttcatc
gttcagtattacggcctcgtgatggacctgctcgtgctcgggttgcaccgtgccagcgag
atggccggcccgccccagatgcccaacgacttcctcagcttccaagacaccaccaccgag
agcgcccacccaatcagactgtactgccgttacatcgaccgcatacacatcttcttcagg
ttctcagccgacgaggccagggacctgattcagcggtacctgacggagcatccggacccc
aacaatgagaacatagtgggctacaacaacaagaagtgctggcctcgtgacgctcggatg
agactcatgaagcacgacgtcaacctcgggcgagcggtgttctgggacatcaagaaccgc
ctgccccgatctgtgaccaccgtgcagtgggagaacagctttgtgtcggtttacagcaaa
gacaaccccaacctgctctttaacatgtgtggctttgagtgccgcatcctgccgaagtgt
cgcaccagctacgaggagttcacccacaaggatggggtctggaacctgcagaatgaggta
actaaagagaggacagcacagtgcttcctgcgtgtggatgatgaatcaatgcagcgcttc
cacaacagagtacgccagatcctgatggcctctggatccacgactttcaccaagattgta
aacaagtggaacacagctctgatcgggctgatgacgtacttccgtgaggctgtagtcaac
acgcaggagctcctggaccttctggtgaaatgcgagaacaagattcagacgcgtatcaag
atcggccttaactccaaaatgcccagccgcttccctccggtggtcttctacactccgaag
gagttgggaggtctcggcatgctgtccatgggtcacgtgctcatcccccagtcagacctg
cggtggtccaagcagacggacgtaggcatcacccacttcaggtctggaatgagccacgaa
gaagaccagctcattcccaacttgtaccgttacattcagccgtgggagagcgagttcatt
gactctcagagagtctgggccgagtacgccctcaagaggcaggaggccattacccagaac
aggcgtctcactctggaggacttggaggactcgtgggacagaggaataccccggatcaac
acactgttccagaaggacagacacacgctggcctatgacaaaggctggagagtcaggaca
gatttcaaacagtatcaggtgctgaagcagaatccgttctggtggactcaccagaggcac
gacggtaaactgtggaacctgaacaactaccgcacagacatgatccaggccctgggcggc
gtggagggcatcctggagcacacgctcttcaaaggcacttatttccccacctgggagggt
ctcttctgggaaaaggccagtggctttgaggagtccatgaaatggaagaagctgacgaac
gctcagagatctggtctcaaccaaattccaaaccgtcgctttactctctggtggtcaccc
accatcaacagggccaacgtgtatgtgggtttccaagtgcagctggacttgacaggaatc
ttcatgcacggcaagatccccacgctgaagatctccctcattcagatcttcagggctcac
ttgtggcagaagatccacgagagcattgtcatggatctctgtcaggtgtttgaccaggag
ctggatgctctggagattgagactgtgcagaaggagaccatccaccccaggaagtcctac
aagatgaactcgtcctgcgcggacatcctcctcttcgcgtcatacaagtggaacgtctcc
cggccgtctctactcgccgactcgaaggacgtgatggacagcaccaccacacagaagtac
tggattgacattcagctccgatggggagactacgactctcacgacatcgagcgctacgcc
agagccaagttcctggactacaccaccgacaacatgagcatctacccctcccccacagga
gtgcttattgccatcgacctggcttacaaccttcacagtgcgtacggcaactggttccct
ggaggaaagcctctgatccagcaggccatggccaagatcatgaaggccaaccccgctctt
tatgtgctccgcgagcgcatccgtaaaggcctgcagctgtactcctcggagcccaccgag
ccttacctgtcctcgcagaactacggcgaactcttctccaaccagatcatctggttcgtg
gacgacaccaacgtgtaccgagtcaccatccacaagacctttgagggaaacttgaccacc
aagcccatcaacggagcgattttcatcttcaaccccaggaccggtcagctcttcctgaag
atcattcacacgtctgtgtgggctggacagaaacgtcttggacagctggccaaatggaaa
accgctgaagaagtcgctgccctgattcgctccctccccgttgaagaacagccaaaacag
atcatcgtaaccaggaagggcatgctggaccctctggaggtccacctcctcgacttcccc
aacatcgtcatcaagggctcggagttgcagctgcctttccaggcctgtctgaaggtggag
aagttcggagacctgatcctgaaggcgacagaaccgcagatggtgctgttcaacctctat
gacgactggctgaagaccatttcgtcttacacggccttctcccgtctcatcctgatcctc
cgagcgctccacgtcaacaatgaccgagcgaaggtgatcctgaagcccgacaaaacgacc
atcaccgagccccaccacatttggcccacgctcaccgatgaggagtggatcaaggtggaa
gtgcagctcaaagatctcattctggccgattatggcaaaaagaacaacgtgaacgtggcc
tcgctgacccagtcggagatccgcgacatcatcctgggtatggagatctctgccccgtcg
cagcagcggcagcagatcgccgagatcgagaagcagaccaaagagcagtcgcagctcacc
gccacgcagacgcgcaccgtcaacaagcacggagacgagatcatcacctccaccacctcc
aactacgagacgcagaccttctcctccaagaccgagtggagagtcagagccatatccgct
gccaacctccacctccggaccaaccacatctacgtctcgtccgacgacatcaaggagacg
ggatacacctacattcttcccaaaaacgtcctgaagaagtttatctgcatctcagatctg
agggctcagattgcaggctacctgtacggcaccagcccacctgacaacccccaggtgaag
gagatccgctgtatcgtcatggtgcctcagtgggggacgcaccagaccgtccacctcccc
aaccagctgcctggtcatgagtatctcaaggaaatggagcccctcggctggatccacacg
cagcccaacgagtcgccgcagctgtcccctcaggacgtcaccacccacgcaaagatcatg
gctgataacccatcctgggatggagaaaagaccatcataattacttgcagcttcacgccc
ggctcgtgcacactcacagcctacaagctgacgcccagtgggtacgagtggggtcgtcag
aacaccgacaagggcaataaccccaagggttaccttccgtcccactacgaaagagtgcag
atgctgctgtccgatcgcttcctgggcttcttcatggtgcccggccaagtctcctggaac
tacaacttcatgggcgtgcgccatgatcccaacatgaagtacgacctgcagctggccaac
cccaaggagttctaccacgaagtccatcgaccctcgcacttcttgaacttcgcctctctg
caggagggagagatttacaacgctgaccgcgaggacatgttcgcctga
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integrated database retrieval system
