Kryptolebias marmoratus (mangrove rivulus): 108246106
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Entry
108246106 CDS
T05608
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
NDNF
Motif
Other DBs
NCBI-GeneID:
108246106
NCBI-ProteinID:
XP_017288968
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Position
LG8:27260886..27306731
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AA seq
1565 aa
AA seq
DB search
MSPRLLASTPSFWLMLCFLLSVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGY
KVRVRTTSEEPQPELMLTTTRGRATVAGLDSSQEYSLQVFVLNGTTEKLLAKRRFTMEAL
RDEEMIRSGGRENRKKMMPGGSGSGDLDDVTELLLGLPTVRFPDPTTITPATVTTPELPA
TKTSSELPDETPEKITKEKRKRKKEKERHRYTVEIKEEQGTKQGMSQRKPYKCDSDAAGD
IMLLVDGSWSIGRTNFRRVRDFLEGLVTPFHIGPNHIQIGLTQYSGDPRTEWNLNNFGTK
DQLLEAVRNFRYKGGNTFTGQALLHVMEENMKPEAGARLEVPFFLVLLTDGKSQDDAIAA
ANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLSKLVARLVHILCGRI
KDRGITKRMEPGATADPALSYPSPADLRFSELGSRQVKLHWTNPSQPVQQYRVVYHSADS
QSPQEVVLSGSESTVLLDGLSSQTLYHISIFPVYEDNVGLALRGTVTTLPLAMPASLEVA
PSSFSTLRVSWSPAPGTTQYMILYSALNDGEPDDAKEEKFSADQTVVELAGLLPETDYSV
TLYALYDEEPSDPVTSVASTFALPAPASVQFPVVTHSMVRVSWVPGSVDIPSHRITYSTN
HGSDVKQVEVTGMSSVLVQNLSSLSRYLVSVQSLYPQGVSSAVTGNITTLKVPSPSDLRV
TNFSGSEIIVRWEAAADDVVSYLIKWISLSGGDLRQLKVNGDHEGAVLTGVEDDKEYQIS
LSALYGDGAQSEAVAIRYSTLSGGGPSSVTVSEESAVSLLVSWIPPNAHVLQYRVTYTPL
TGAESQDRTVLVQGGEKQVVLESLQPDTRYSVLVTAEYRSREGGSGSAQGKTTSLRVSSV
SVVRSDHSSICLSWRPVSAVDGYRIVIQSLKDKQTKQDIVDESSSSYCFTELEPETMYRI
SVHSLLGSVEGAAVSILHPTAPAPVRIHIHPQMYPIHNEVCPEVTVRNSIVKGFDMMEAF
GLTQRAHSSVEGVAAEPFVFNTLLTYTLYRDVQLTQSTKFIHPAGFSPEHTISIAFRLLQ
DTPREPFALWQLTDNDFQPKMGVVIDPSTKHLMYFSLDYRGEVQELLFDQPQVHKLFYGS
FHKVHLSVSQVSVSLSVDCQHVGERPARPLGNLPTDGFEMLGKLVKTRGPNSGSAPFQLQ
SFEIICNTTWASEDTCCDLPGVRDEESCPAPDYTCTCSSDVPGAPGLPGSIGRPGSRGEK
GEKGEQGQKGEVGPPGKPGLEGGLGPVGSVGPRGITVQGKMGPPGARGEKGTPGRPGVQG
LPGPPGPKGEEGIPGPQGIRGVEGNIGPPGSTGARGFQGIPGHPGPVGDRGPSGPVGPTG
LPGNKGERGEKGDPQSMAVIYQLVTQACEQLIHKEVLKLDMYINKISRKPAPIEEPVGPP
GEPGIPGPRGPPGARGNQGNVGSRGRLGRPGYPGEQGRRGFPGEKGHVGNNVQGPSGMKG
FAGPAGESKLGVPGPKGDDGKSGVVGTPGAPGQPGEIGPPGVCDSSGGCQTVPQQTEDPY
YGYLP
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcgccttcttgcctcaactccatctttctggctgatgctgtgtttcctgctt
agtgtcttcctgctgctgtcctcaggagtccatggccaaggtcgtcttaaactaacagtt
ctgtctgaggacagactgcagatgaaatggaaggaggctgatggacccgttcagggctac
aaagttcgagtcagaactacttcagaggagccacaaccggagctgatgctgaccaccacc
cggggccgggccacagtggcaggactggattccagtcaggaatattcgctccaagtcttt
gtgctgaatgggacgacagagaaacttctcgcaaaaagaagattcaccatggaggctctg
cgagacgaggagatgatccgtagcggtggtcgtgagaacagaaagaagatgatgccaggc
gggtcggggtcgggagacttggacgatgtgacggagcttctgttgggtctgccaacagtc
cggttcccagaccctacaacaatcactcctgccactgtcacaactccagagctcccagct
acaaaaacctcttctgaactccccgatgagaccccagagaaaatcaccaaagagaaaagg
aagaggaagaaagaaaaggagcgacatcgttacactgtggagatcaaagaggagcagggg
acaaaacaggggatgtctcagagaaaaccgtataaatgtgacagcgatgcagcgggagac
atcatgctgttggtggacggctcctggagcattggacgcaccaacttcaggcgggtcaga
gacttcttggagggtctggtgacaccgttccacattgggccaaatcacattcagattggt
ctaacccagtacagtggggacccccgcacagagtggaacctcaacaacttcggcactaaa
gaccagctattggaggcggtgaggaattttagatacaaaggaggaaacacatttacagga
caggcactgctccacgtcatggaggaaaacatgaaacctgaggcaggcgccagactagaa
gtaccatttttcttggtcttgttgactgacgggaagtctcaggatgatgcgattgcggca
gcaaaccggctgaagaacgcaggcgttgaaatcattgctgtaggtgtgaagaatgcagat
gaagctgagttgagacaggtggcgtcggagcctgtggatctaaatgtttacaatgtgaat
gacttccccctgctcagcaaactggtggcacgactggttcacatactgtgtggaaggata
aaagaccgtggcatcacaaaacgaatggaacctggggccacggcagacccagccctctcc
tatccaagccctgctgatctccggttctctgaactcggatccaggcaggtgaagctgcac
tggaccaatccatctcagccagtccagcagtacagagtggtgtaccacagtgctgacagt
cagagtccccaggaggttgtgttatccggctcagagtccaccgttctgctcgacggcctc
tcatcacagactctgtaccacatttccattttccctgtgtatgaagacaacgttggcctg
gcgctcagaggaactgtcacaacattgccgctggccatgccggccagtttagaggtggct
ccgtcttcgttcagcacgctgcgagtgagctggagtccagctcctggcacgactcagtat
atgattctgtactcggcgctcaatgacggagagcctgacgatgcgaaggaggagaaattc
agtgccgatcagacagtggtggagctcgcagggctgctcccagaaacagactactctgtc
acactttatgctctctatgatgaagagcccagtgatcctgttacttctgttgccagcaca
ttcgctctcccagctcctgcgagtgttcagtttccggtggtaacccacagcatggtgagg
gtgagctgggtgccgggctccgtggacatacccagccacagaatcacctacagcaccaac
cacggcagtgatgtgaagcaggtggaggtaacggggatgagctcggtcctggtgcagaac
ctctcgtctctgtccagatacctggtttcagtccagtctctttacccacaaggcgtgtct
tctgctgtcaccggtaacatcaccacattgaaggtgccttctccatcagacctcagagtg
acaaacttttcaggcagcgagatcatcgtccgctgggaggctgcagccgatgatgttgtc
tcttacctcatcaagtggatttctctgagtggaggagacctaagacagctgaaggtgaat
ggtgaccacgaaggagcggtcctgacgggggtggaggatgataaagagtaccagatctct
ctgtctgctctttatggagatggagctcagagtgaagctgtggccattcgctacagcacc
ttgtcaggtggaggaccatccagtgtaactgtttcagaggaaagtgcggtcagcctgctg
gtctcctggatacccccaaatgctcatgttctgcagtaccgtgtgacctacacacctctg
actggagctgagagccaggacagaactgtgttggtgcaaggtggtgagaaacaggtggtg
ttagagtcattacagccagacactcgttacagcgtcttggtcacagctgagtaccgcagc
agggagggaggcagcggctcagctcaaggcaaaactaccagtctgcgagtgagcagtgtc
agcgtggtcaggtcagaccactcaagtatatgtttatcatggagaccagtgtctgccgtc
gatgggtaccgaattgtcattcagtcccttaaagacaaacaaacaaagcaggatattgtc
gatgagtccagcagcagttactgcttcactgagctggaaccagagaccatgtaccggatc
agcgtccactcgctgctcggctcagtagagggtgctgccgtctccatcctccatccaaca
gctccagctcctgtcagaattcacatccatcctcaaatgtacccgatccataatgaagtt
tgtcctgaagtcaccgtcagaaacagcatcgttaaagggttcgacatgatggaagcgttt
ggtctgacacagagagctcactcttcagtggagggggtggcagccgagccttttgtcttc
aacactctccttacctacacgctgtacagagacgtccaactgacacagagcaccaagttc
attcaccctgcgggtttctctccagagcacaccatcagcatcgcctttcggctgctgcag
gatacacccagggagcccttcgcgctctggcagctcactgacaatgacttccagccaaag
atgggggttgttattgacccttctaccaaacatctgatgtacttcagcctggactacaga
ggggaggttcaggagctgctgttcgatcagccgcaggttcacaagttgttctatggaagt
tttcacaaggttcacctgtctgttagccaggtgagcgtgtctttgtctgtggactgccag
catgtgggtgagaggccggctcgacctctcggaaacctgccaaccgacggctttgagatg
ctggggaagctggtgaaaacacgaggacccaacagcggatctgccccgtttcagctgcag
tcctttgaaatcatctgtaacaccacctgggcttcagaagatacctgctgcgatctgcct
ggagtgagagatgaggagagctgccctgctcctgactacacgtgtacctgttcttctgac
gttccaggagctccaggtctccccgggtcaatcgggaggccgggatctcgaggagagaaa
ggcgagaaaggagagcaaggccaaaagggggaggtgggccccccaggaaagcccggactt
gagggaggcctcggacctgtgggcagcgtaggaccacgaggcattacggtgcagggcaaa
atgggtccaccaggagcaagaggagaaaagggaactcctgggcgaccgggagtacaaggt
ttaccaggacctccaggtccaaagggggaggaggggatcccgggcccccagggtatcaga
ggtgtggagggaaacatcggcccccccggcagcactggagccaggggattccagggaatt
ccaggacacccggggcctgttggggaccggggcccctcagggcctgttggacctacgggt
ctgccaggaaataaaggggaacgaggtgaaaagggtgatcctcagtctatggctgtgatc
tatcagctggtcacacaggcctgtgaacaactaatacacaaggaggtattgaaacttgac
atgtacattaataagattagccgtaagccagctcctatcgaggagccagtcgggcccccg
ggagaacctggaataccggggcccaggggcccgcctggtgccaggggcaaccaggggaac
gtgggctcaagagggagactcggcaggcctgggtatccaggagaacaaggacggagaggt
tttccaggggagaaaggtcatgttgggaacaacgtccaggggccctctgggatgaaagga
ttcgcaggtcctgctggggagtccaagctgggagtcccaggtccgaaaggagacgatggc
aagtcaggagtcgtagggactccaggagccccgggtcagccaggcgagattggaccaccg
ggtgtgtgtgatagcagtggaggctgccaaacagttccccaacaaacagaagacccgtat
tatggctacctgccctga
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