Kryptolebias marmoratus (mangrove rivulus): 108246367
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Entry
108246367 CDS
T05608
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108246367
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108246367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
108246367
NCBI-ProteinID:
XP_017289354
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All DBs
Position
LG5:3887790..4030266
Genome browser
AA seq
1871 aa
AA seq
DB search
MQLSVRLSVFLLLFVLVAVFPHTAKGQQPSPPRRFRAKVVGPNKLDVSWNKPKEGAVDSY
KVIYTTRPGGKQKVVPLSKQETKLLIEDYDPSKDYNFKIFAVKAGKDSKPLQGKQEAQRS
TVETTQSQTGQSGDVTRENNEISEVDEGFMCKSPAIADIVILVDGSWSIGRINFRLVRTF
LENLVRAFSVEFDKTRIGLAQYSGDPRIEWHLKTHTTKEAVIDAVKNLPYKGGNTLTGLA
LTFILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADKN
ELKAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVDQLDKQIKGGGEPAPAPTSISP
PRDLVTSEITARSFRVTWTHPQGQVEKYRVVYYPASGAQPEEKVVQGTVNSVELNYLLSL
TEYQVAVFAIYRSYASEALRGSATTLALPMVNDLELFDITHSTMRVRWKPAAGASGYMIL
YAPLTEEDSGDEKEVKVEDSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPL
IPARNLDFTEVDHSSARLTWESANRLVKGYRIMYVKTKGVQTNEVDVGKVTTYVLKNLTS
LTEYTVGVFAIYNEGEAEAVTESFTTKTVPDPQDLTSSDIFSDSFRVSWRHPASDVVLYR
LIWTPTDGGDSEEVLVNGNVNTYLIKGLSPESEYEVLLAAIYGNEVESDEVVLIETTAKR
TTTVATTTTVVATPRYGVKNIRINEETTFSMRVSWQPVDSRNVRHYRLTYISAKGDRAEE
TRMVPAGQNSLVLQPLLSDTEYKVSITPVYVEGDGAVASQKGRTLPLSAPKNLRVSEEWY
NRFRISWDIPPSPTMGYRVVYQPLSAPGSALETFVGEDVSTMLIVNLLSGTEYSVKVIAS
YTTGSSEALAGRAKTLYLGVTNLSSYQVRTSGLCTQWQPHRHASAYRAVIQSLAGSQKQE
TRLGGGASRHCFNNLKPNTEYNISLYAQLQDGTEGPAVSATVKTLPVPTPAPVKLPTTTP
LPTIPAAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTVGALDRIGPDGTQVAIA
QFSDDARTEFKLNSYSNKERLLEAINKITYKGGNTKTGRAIQHVKENIFTAEGGVRRGIP
NVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDL
DAFQRIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVDNRYNSISGVSMVPGT
FNTFPCFHLHSDALLAQPTRFIHPEGLPSDYTITLLFRLLPDTPEEPFALWEIRNKDNDP
LTGVILDNGGKTLTFFNNDYKGDFQTVTFEEPEIKKLFFGSFHKLHIAISKTNAKVFIDC
KMVAEKSINAAGNITTDGVEVLGRMVRSRANKDSSAPFQLQNFDIICSTSWATRDKCCEL
PGLRKEVDCPALPKACTCTQESKGPPGPPGVPGGPGIRGARGDRGEPGPVGPAGPVGDTG
IPGLQGPPGPQGPSGRSIIGPPGPLGEKGQKGDSGQQGPQGIPGRPGAQGREGPPGQRGL
LGKDGPAGRQGPPGTMGTPGAPGSPGSPGSPGKQGQLGPPGPPGSKGERGERGDLQSTAS
VQAIAREVCEQLIQSHMSRYNTILNHAPSPPVTIRTVPGPPGEPGRPGTAGPQGEQGPPG
RPGFPGQNGQNGNPGERGQPGEKGEKGSQGVGVQGPRGPSGPPGPQGQGRPGNQGPTGRP
GNPGTPGRPGVPGPVGPPGPPGYCDQNSCLGYNVGEDEEITHLGAIPPVQLPPSVFQNYG
EAEEDDPYRYYQPNYPAPQPVSPDDPALALDDVELRPGSYRSRRSTKDEGEKIGSKRRIK
RGAKKRPELTK
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atgcagctctcagtcagactgagtgtcttcctgctgctctttgttctcgtcgctgtgttc
cctcacacagcaaaaggccaacaaccatcacctccgcgaagatttcgtgcaaaagttgtt
ggtccaaacaagctggatgtgtcatggaataaaccaaaagaaggagctgttgatagctac
aaggtcatttacaccacacgtccaggtggaaagcaaaaggtagtgccgctatcaaaacag
gaaacaaagctgctcattgaagattatgatccatcaaaagattacaacttcaagatcttt
gcagtcaaagctgggaaggacagcaaacctcttcaagggaaacaagaagctcagcgatca
accgttgaaacgactcagtcccaaacgggacaaagcggtgatgtcacacgggaaaacaac
gagatctcagaagttgacgagggattcatgtgcaagagtccagccatcgctgacatcgtg
attctggtggatggttcttggagtattggccgcatcaacttcagactggttcgaaccttc
ctggaaaacctggtcagagccttctctgtggagtttgacaagacgcggataggcttggct
cagtacagcggagaccccaggatcgagtggcatctaaaaactcacaccaccaaagaagct
gtgatagatgctgtgaaaaacctgccgtataaaggaggaaacacactaacaggtctggct
ctgacctttatcctggaaaacagtttcaaaccagaatctggctccaggcccggtgtccca
aaaataggaatcctcatcaccgatgggaagtctcaggatgatgtgattccccccgcgcag
agcctgaaggatgctgggatagaactgtttgccattggtgtgaaaaacgctgataagaac
gagctgaaggccatcgcgtcgcctcctgaggagactcacgtctacaacgtggcggacttc
agtgtgatgagcgacattgtggaaggcctcactaagaccgtctgtgatcgtgtcgatcag
ctggataaacagataaaagggggaggagaacctgcccccgctcccacctcaatctctccc
cctcgtgacctcgtgacatccgagattacggcccgcagtttccgtgtgacatggacccac
ccacagggccaggttgagaaataccgtgtggtctactatcctgccagtggagcacaacca
gaagaaaaagtggtccaggggacggtgaacagcgtggagctgaactacctcctctctctg
acggagtaccaggtggcagttttcgccatctaccgcagctacgccagcgaggccctgaga
ggaagtgccaccacattggccctgccgatggtgaacgacctggagttgtttgacatcaca
cacagcaccatgagggtccgctggaagcctgccgccggggcttcgggctacatgatcctg
tacgccccgctgactgaggaggattctggagatgagaaggaggtgaaggtggaagactct
gtgaatgaagtggagctggagggtctgactccagctacagagtacacggtaacagtttac
gccatgtatggagaggaggccagtgaccccatgaccagccagcagaccacattaccactg
atcccagcaaggaacctcgactttacagaggtggaccacagctccgcccggctcacgtgg
gagtccgccaacaggttggtgaaaggctaccgcatcatgtacgtcaagaccaagggggtc
cagaccaatgaggtagatgttggcaaagtgacaacgtatgtgcttaaaaacctgacctcc
ctgacggagtacacagtcggtgtctttgccatctacaacgaaggggaagctgaagctgtg
actgagagcttcaccacaaagaccgtccccgacccgcaggatctgacgagcagcgacatc
ttctcagacagcttcagggtgtcatggcgacacccggcgtctgatgtggttctgtaccga
ctcatctggacccccaccgatggaggagacagtgaggaggttctggtgaacgggaatgtg
aacacctacctgataaaaggactaagtcccgagtcagagtacgaagtcctcctggccgcc
atctatgggaacgaggttgagagcgatgaggtggttctaatagaaaccaccgctaaaaga
acaactactgtcgctacaacaaccacagtagtagcaactccccgttatggggtgaagaat
ataaggatcaatgaagaaaccacatttagcatgcgggtgtcgtggcagcctgtggactcc
agaaatgtccgtcattatcgactgacctacatcagcgcgaagggagaccgagccgaagag
acgaggatggtgcctgctggtcagaacagcctggttctgcagccgctcctgtcagatacg
gagtacaaagtctccatcactcctgtttacgtcgagggagacggagcggtcgcttcacaa
aagggacggacgcttcctctttcagctccaaagaacctgcgggtctcagaggaatggtac
aaccgcttccggatcagctgggacattccaccttcacccaccatgggctacagggtcgtc
taccagcctctttctgctcctggatcagctctggagacctttgtgggggaagacgtgagc
accatgctgattgtgaacctgctgagtgggacagagtacagtgtcaaggtcatcgcctcc
tacaccaccgggtccagtgaggctctagcaggaagggcaaagaccttgtacctcggggtg
actaatctgagttcatatcaagtgaggacgtccggtttgtgtacccagtggcagcctcac
cggcatgccagtgcatacagagcagttattcagtctctggctggtagccagaagcaggag
accagactgggcggaggagccagcagacactgttttaacaacttgaagcccaacacagag
tataacatcagtttatacgctcagctacaggacgggactgaaggtcctgcagtctctgca
accgtgaagacactaccagtcccgaccccggcacccgtcaaactccccaccaccacgccg
ctacccacaatccccgctgccaaggaagtttgtaaggcagccaaagccgacctggtcttc
ctggttgatggctcctggagcatcggtgatgagaacttcctgaagatcatccgtttcctg
tacagcaccgtcggagctctggaccggatcggcccagacggcacacaggtggccattgcc
cagttcagtgacgacgcccggactgagttcaagctgaactcgtacagcaacaaggagcgg
ctgctggaagccatcaacaagattacctacaagggaggaaacacaaagacaggtcgagcc
attcagcatgtgaaggaaaacatcttcacagctgagggaggtgtcaggaggggaatcccc
aacgtcctcgtggttcttaccgatggtcgatcccaggatgacgtcaataaagtttccaaa
gagatgcagatggaaggttacatcgtgtttgccatcggtttcgccgatgccgactacggg
gagttggtgagcattgccagcaagccaagcgacagacatgtcttctttgtggacgacctg
gacgccttccagaggatcgaggagaagctggtgacctttgtgtgcgaggctgcgactgcc
acttgtccgtcaataccaatgagtggcagtacgactccaggtttccgtatgatggagctg
tttgggctcgttgacaatcgatacaacagcatctccggtgtttccatggttcctggcact
tttaatactttcccctgtttccatctgcacagcgatgctctgctggctcagccaaccagg
ttcatccatcctgagggacttccctctgactacaccatcactctgctgttcagactgctg
cccgatactccagaggagccctttgcactctgggagatccgcaacaaggacaacgatccg
ctgactggagtcatcctggacaatgggggaaaaacactgacgttcttcaacaatgattac
aagggagactttcagacagtcacctttgaagagccagaaatcaaaaagctcttctttggc
agcttccataagcttcacattgcaatcagcaaaacaaatgccaaagtgtttatcgactgc
aaaatggtggcagagaaaagcatcaacgcagcgggaaacatcaccactgatggagtggaa
gttctgggccggatggttcgctccagagcgaacaaggacagctctgcgccgttccagctg
cagaactttgacatcatctgcagcacttcatgggccaccagagacaagtgctgtgaactt
cctggtctgaggaaggaggtagactgcccggccttgcccaaagcctgcacctgcacacag
gagagcaaaggccccccaggtccccctggagtaccaggaggccctggaatcagaggagcc
agaggcgaccgtggagagccaggcccagtggggcccgctggtcctgttggagacacgggt
atacctggacttcagggaccacctggaccacaaggaccaagtggacgctccattattgga
ccccctggtcctctaggagagaaggggcagaaaggcgattctggccaacaaggaccacag
ggaattcctggaagacctggagctcaagggagagaaggacctccaggacaaagaggactg
cttggcaaagacggccctgctggaagacaaggccccccaggaactatggggactccagga
gctccaggatccccaggaagtccaggttctccaggaaaacaggggcaactgggaccaccg
ggtcctcctggaagcaagggggagagaggtgaacggggtgacctccagtcaacagcatca
gttcaggccatcgccagggaggtttgtgagcagctcatccaaagccacatgtctcgctac
aacaccatcctgaatcacgcccccagtccaccggtgaccatccgaacagtaccgggacct
ccaggagaacctggtcgaccaggaaccgcagggccacagggagaacagggacctccagga
agaccaggctttccaggacaaaatggacagaatggaaacccaggagaaagaggtcaacca
ggagaaaaaggtgagaaaggatctcaaggagttggtgtccaaggccccagaggaccttca
ggacctcccggtccccagggacagggcagacctggcaaccagggtcccacggggcgacct
ggaaatcctggaactcctggtcggcctggagttcccggaccagttggtcctccaggcccc
ccaggatactgtgaccagaactcttgtttgggctacaatgttggagaagatgaagaaatc
actcacctgggcgctatccccccagtccaacttccacccagcgtcttccaaaattacgga
gaagctgaggaggacgacccataccgatactaccaacccaactatccagccccccagccc
gtatcgcctgatgaccccgcgctcgcacttgacgacgtggaattaaggcccggctcgtac
cgcagcagacggagcacaaaggacgaaggagagaaaatcgggtcaaagaggagaataaag
agaggagcgaagaagcggcctgaactaactaagtga
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integrated database retrieval system
