Kryptolebias marmoratus (mangrove rivulus): 108246462
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Entry
108246462 CDS
T05608
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108246462 (chd1)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108246462 (chd1)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108246462 (chd1)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
108246462 (chd1)
SLIK complex
108246462 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
CHDCT2
Motif
Other DBs
NCBI-GeneID:
108246462
NCBI-ProteinID:
XP_017289508
UniProt:
A0A3Q3FTH9
LinkDB
All DBs
Position
LG14:complement(8652394..8679266)
Genome browser
AA seq
1782 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSRSGSASASSSGSSSSSSSSSSRSGSSDSGSGSDS
GSQSDSDTEKSNEKMEPQNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQKQESSNSGSD
EDSSSSDESETSSGSKKRRNSDSSDSGSGSGSGSDSGSDSSAEGNSNETASDYEPSPKFK
SRKPPTKMNSRNGKKCVAQRTKCSSSEDDNNYTKMASAGPRRQATVNVSYKEDEELKTDS
DDLVEVLGEDVPQPEEDEFETIERVMDCRIGRKKAIGSATTVYAIEADGDPNANFDPNKE
AGEIQYFIKWKNWAHIHNTWETEEALKLQNVRGMKKLDNFKKKEQEKKKWLKMASPEDIE
YFNCQEELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIAKK
FQKCIDDYMSRNQSKTIPFRDFKLMKQRPRFVPMKKQPTYIGGDGLELRDYQLDGLNWMA
HSWSKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIFLWA
PLMNVVVYLGDINSRNMIRTHEWMHVHSKRLKFNIILTTYEILLKDKSFLGGVNWAFIGV
DEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWELFED
EHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRN
YKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPDDEESFNKAEALQQLIRSSGKLVLL
DKLLVRLKERGHRVLIFSQMVRMLDILAEYLRCRQFLFQRLDGSIKGEMRKQALDHFNAE
GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLV
TKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFSKEELSAILKFGA
EELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFTVMEDEDLD
IDSERSQKSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNSNVSRLSRNR
RYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLERLDAIAR
DAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAK
LVISHEEELAPLHKAIPADPEERKRYMIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGS
WEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQARADYLIKLLSKDLAKKEAQKQAGNANSR
KRKPRNKKSKALKTTKADEVPKSPSSDLQSDKRSDDEDELDEDDKEVAQVKMSSRWGRAD
KAVVKEEKEEENDDDEQDVFSSGERDGKEKEIKKDVKKERDDSFDFKDIKESKDKKEIMA
LQTKHRHEESIEKNEVKTEVQERIKKASDLSVHKAASAENVAVSEESEELDQRTFSVCKE
RMRPVKAALKQLDRPEKGLSEREQLEHTRQCLINIGDHITECLKEYSNPDQIKQWRKNLW
IFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRNTNTQGYKHLDVERLKDGAHHDE
SSRDSYSSDRHPPSARHHESSGAKERHSFESHKKTTIGESRKRPYSSFSNGKDHRDRDHY
RADNRDRQDRYYDSKHRKLEEIRTSRDHRLDAKDLSHSDHRSSYRYHSDWQTDPRMSASG
ARSPRDQRSPCDSRSPMGYHSPYEYSPDHRSTPEQIWSSRKT
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacgcagtgaagacgaaagtgtgagcaacagcagtggagaatcaagcaattcc
gacgatgaatccggctcccggtcaggctcggcctcagcttccagttcaggttccagctcc
agctcctccagcagcagcagccgatcggggagcagcgactccgggagtggctcggactct
ggcagccagtcagattctgacacagagaaatccaacgagaagatggaaccacaaaataag
tcaaacattgatggagcagagttctggaagtccaatcccagcatcctcgcagtgcaaagg
tctgctatgctcaggaaacaacagcaacagaaacaagagtcttcaaacagtggctctgat
gaggattcttcaagtagtgatgaatccgaaacatcgagtggatctaaaaagagaagaaac
tccgactcctctgactctggatcaggctctggctctgggagtgactctggatcagattca
tcagcagagggtaacagtaatgagactgcatcggactatgagcccagtcccaaattcaaa
agcagaaagcctccaaccaagatgaactctcgaaatggcaaaaaatgtgtcgcccagagg
acgaaatgctcgtcatccgaggatgacaataactacacaaagatggcgtctgcggggcca
cggcggcaggccacggtcaacgtcagttacaaggaggacgaggagctgaagacggactcg
gacgatttggtggaggttctgggtgaagatgtcccgcagcctgaggaagatgagtttgaa
acaatagagagagtaatggactgcaggatagggaggaaaaaggctatagggagtgcaacc
actgtatatgctatcgaggcagacggggaccccaatgccaactttgatcccaataaagag
gccggcgagatccagtattttataaagtggaagaattgggcccacatccataacacatgg
gagactgaggaggcactgaagttgcagaacgttaggggcatgaagaaactggacaatttc
aagaagaaggagcaagagaaaaagaaatggttaaagatggcttcaccagaagatatagaa
tatttcaattgtcaggaagaattgatggatgacctgcactcccagtatcagcttgtggag
cgaataatagggcattcaaaccagaagtcggctgctggttacccagactacctttgcaag
tggcagggtttaccatattcagagtgcagctgggaagatggtgctctgattgccaagaag
ttccagaaatgcatcgatgactatatgagcagaaatcagtctaaaaccattccatttaga
gatttcaagctgatgaagcagaggcccaggttcgttcctatgaagaagcagccaacttac
ataggaggtgatggactggagctcagagactaccagctggacggtttaaactggatggcc
cactcctggagcaaaggcaacagttgtatccttgctgatgagatgggcctcgggaagacc
atccagaccatctccttcctcaactacctgtttcacgagcaccagctgtatggaccgttc
ctgctggtggtgcctctttctacactaacctcctggcagagggaaatcttcctctgggcc
ccactgatgaacgttgtggtctacctgggagacatcaacagcaggaatatgatcagaaca
cacgagtggatgcatgtgcacagcaagagactgaaatttaacatcatcctcacaacatat
gagatccttctcaaagataagtcatttttgggcggcgttaactgggccttcattggtgtg
gatgaagctcaccggctgaaaaatgatgactccctcttgtataagacgatgatcgacttc
aagtccaatcacaggctcctaatcaccggaacaccgcttcagaactccctaaaagagctc
tggtccctgctgcacttcatcatgcctgaaaaatttcactcttgggagctcttcgaggac
gaacacggtaaaggcagggactctgggtacactagtctgcacaaggagctggagccgttt
ctgctgcgtcgcgtcaagaaggacgtggaaaaatctctcccagctaaagtggagcagatc
ctccgagtggagatgagcgccatccagaaacagtattacaaatggattctgaccaggaac
tacaaggctctcagtaaaggtaccaaaggcagcacgtcgggcttcctgaacatcatgatg
gagctgaagaaatgttgtaaccactgttaccttatcaagcctccagatgatgaagagtct
ttcaacaaagctgaagctttacagcaactgatccgcagtagtggaaagctggttcttttg
gacaaacttcttgtccgtttgaaggagcgaggtcacagagttctcatcttctcccagatg
gtacggatgctcgacatcctggctgaatacttgaggtgtcggcagttccttttccagaga
ttagatggctccattaaaggggagatgcggaagcaggctttggatcattttaatgccgaa
ggttcagaggacttctgcttcttgttatctacgcgcgcgggtggccttggtatcaatcta
gcatcggctgacacagtggtgatctttgactcagactggaacccccaaaacgatctgcaa
gcccaagccagagcgcacaggattggccagaaaagacaggtgaatatctatcgactggtg
acaaaaagctcagtggaggaggatatcattgagagggcaaaaaagaaaatggtgctagac
catcttgtgattcaaagaatggataccacaggaaaaactgtcctacatactggtgctgcg
ccctcaagttcagccccattcagcaaggaggagctctctgccattttgaaatttggcgct
gaggagcttttcaaagagccagaaggcgaagagcaggagcctcaggaaatggacatcgat
gaaatcctcaaaagagctgagacccgggagaacgaccccggaccttcaacagtaggagaa
gagctgttatctcagttcaaggttgccaacttcacagtgatggaggatgaggatttagat
attgattctgagcgaagtcagaagagctgggatgacatcattcccgaagagcaaaggagg
aggatggaggaagaagagaggcaaaaggagctggaagaaatctacttgttaccacgcatg
aggaactgtgccaaacagataagctttaactctaatgtgagtcggctgagtaggaacagg
agatattctggttctgatagcgactccgcctcagaccgaaagagaccaaaaaaacgagga
cgacctcgaaccattccacgggaaaatatcaagggcttttctgatgctgagatccgcagg
tttgtcaagagttacaaaaagtttggaggaccactggagagattggacgccatcgctcgt
gacgctgaacttgtggataagtctgaacacgacctgaaacggctggcagaaaccgtccac
aatggatgtgtgagaacgctacgtgaaaacccctgtggaccagagaagacatcaggaggc
aggcgaggaaaggtgaaaggtcctacattcaggatttctggagtccaggttaatgccaaa
cttgttatttctcacgaagaagagctggctccgctgcacaaggctattcctgctgatcca
gaggagaggaagaggtatatgattccatgccattcgaaggcagcgcactttgacatcgag
tgggggaaggaggatgactccagtcttctcataggaatctacgaatacgggtacggcagc
tgggagatgataaagatggacccggacctaaacctcacacacaagctactaccagatgat
cctgacaagaagccacaggccaaacagctccaggccagagcagactacctcatcaaatta
ctgagcaaggacttggccaaaaaagaagcacagaaacaagcaggaaatgcaaattcacgg
aagaggaaaccaagaaataaaaagagcaaagctctaaagacaactaaggcagatgaggtg
ccaaagagcccgtcctcagatctgcagtcagacaagaggtccgacgacgaggacgaactc
gacgaggacgacaaggaggtggcacaggtgaagatgtcaagcaggtggggccgggcagac
aaggcggtggtgaaggaggagaaagaggaggagaacgacgacgatgagcaggacgttttc
tcatcaggggagagagatggcaaagaaaaagaaataaaaaaagatgtcaagaaggaaagg
gatgatagtttcgactttaaagacattaaagagtccaaagataaaaaggaaataatggct
cttcagacgaaacatagacatgaggagagcatagagaagaatgaagtgaagactgaggtt
caagagcggataaagaaagcctcggacttgtctgttcataaagcagcgagtgcagaaaac
gtggcagtatctgaggagtctgaggaactggaccagaggacgttcagtgtgtgtaaagag
aggatgcggccagtgaaagctgccttgaagcagctggaccgaccggagaaagggctgtcg
gagcgcgagcagctggaacacaccagacaatgcctcataaacatcggagaccacatcaca
gagtgcttgaaggagtattcaaaccctgaccagatcaaacagtggagaaaaaatctgtgg
atatttgtctccaaatttaccgagtttgatgcaagaaagctacataaactgtataagcat
gcaatcaagaaaagacaagaaaatgctcaggcaatggagcagaacactagaaatacaaac
actcaaggctacaaacatcttgatgtcgagaggctgaaggacggcgcgcaccacgacgaa
agcagcagggacagctacagctctgacaggcatccgccttcagctcgacaccacgaaagc
agcggcgctaaagagaggcacagcttcgagtcccacaagaagaccaccataggggagtcc
aggaaaaggccgtactcctccttcagcaacggcaaagaccaccgagacagagaccactat
agagcagacaacagggatagacaggacagatactatgacagtaaacacaggaaactggag
gaaatccgcaccagcagagaccaccggctggacgcgaaggacctctcccattcagaccac
cgctcgtcctaccgctaccactcggactggcagacggacccgcgcatgtcggcgagcggg
gcccgctccccgcgagaccagcgctcgccttgtgactctcgctccccgatggggtatcac
tcgccgtacgagtactcgccagaccacaggagtacgccggagcagatctggagcagccgc
aagacatag
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integrated database retrieval system
