Kryptolebias marmoratus (mangrove rivulus): 108247181
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Entry
108247181 CDS
T05608
Symbol
polr1b
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108247181 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108247181 (polr1b)
Enzymes [BR:
kmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108247181 (polr1b)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108247181 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Birna_RdRp_palm
Motif
Other DBs
NCBI-GeneID:
108247181
NCBI-ProteinID:
XP_037829360
LinkDB
All DBs
Position
LG22:28307527..28313675
Genome browser
AA seq
1158 aa
AA seq
DB search
MDMSSKWGSLPSGPSLKNLTDGRFGTLKDFQDPAVQDLTRAHIESFDQAVTDGLSRVVQA
IPPLEFLSRNDKVSLSFVDATVHSPAVGKGSICTEMKVFPAECRGRRCTYKGKLVADISW
SINGVPKGIIKQSLGQLPVMVKSKLCNLHGMSPKELVRHHEEAEEMGGYFIVNGIEKVIR
MLIMPRRNYPIAMSRPKWKSRGQGYTPYGISMRCVKEEHTAINMNLHYLENGTVMVNFIY
QKELFFLPLGFALKALVDFTDFQIFQELIKGHEDNSFYKTCVSEMLRIVAEEGCTTRSKV
LDYLGEHFRVKLNLPEWYTNEQCANILLNECICIHLKSDAEKFYLLCLMTRKLFAYAKQE
CMEENPDSITCHEVLTPGQLYLMFLKERLTAWLVSVKLSFDKRGSKLSGGWSTENVIKML
NTGSDMSKAFEYLLATGNLHSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVAPTTLTTSLPALLCSLGVT
PVDGPPGRAFSDCYPVVLDGAVVGWVESDLAPTVVESLRRFKVQEPFESXQTSPVRFVTK
FKTSLQVLGEKKTPPWTEIVLVPRTGKASLYPGLFLFTTPCRMMRPVQNLTHGKQELIGT
FEQLYINVGILEDEIEAGVTTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTM
GFPLHSFTDRSDNKLYRLQTPQSPLVRPYMYDHYSLDNYPSGTNAIVAVISYTGYDMEDA
MIVNKSSWERGFAHGSIYKTELVDLAVKVRGEDSVVFGTMAGDPKVNGKLDSDGLPHIGS
VLRYGDPFYGYINLNTGKTHVNFYKGQEICVVDNIKICSNDSGSGRLKRVCITVRIPRNP
TIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKS
AALHGLSHDATPFTFSEESSALEYFGKMLRSGGYNYYGTERLYSGLSGQELEADIFIGVV
YYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDR
LFNCSDRSVAQVCVDCGSLLSPLLEKPPPYWSAMRHRKTTCTLCGKSDSIDSVAVPYVFR
YFVAELAAMNIKVKLDMK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacatgtcctcgaagtggggtagtttaccttccggaccgagcctgaagaacctgacg
gatggacggttcgggacgctgaaggacttccaggatccggcggtccaggacctgaccaga
gcccacatcgagtccttcgaccaggcggtgactgacggactcagccgggtggtgcaggcc
atccctcctttggagttcttgtccagaaacgacaaggtgagcctgtcgtttgtggacgcg
accgtccacagtccagctgttgggaaggggagcatctgcaccgagatgaaggtgttccca
gcagaatgccggggaagaagatgcacgtacaaaggaaagctggtggcagacatcagctgg
tcgatcaacggggttcctaaaggcatcatcaagcagtccctgggtcagctgccggtcatg
gtgaagtccaagctgtgcaacctgcatgggatgtcccccaaagagctcgtcaggcatcac
gaagaagctgaggaaatgggaggttatttcatcgtgaatggaatcgagaaggtcatccgg
atgctgataatgcccaggaggaactatcccatcgccatgtccagacccaagtggaagagc
cggggtcagggctacactccgtacggtatttctatgcgttgtgtgaaggaggagcacact
gcaatcaatatgaacctccattacctggaaaatgggacggtgatggtgaacttcatctac
cagaaggagctcttcttcctccctttaggcttcgcactgaaggccctggtggacttcaca
gacttccagatcttccaggagctgatcaaaggtcacgaggacaattctttctataaaacc
tgtgtgtcggagatgctgcgtatcgtggcggaggagggctgcacaacccgcagcaaggtg
ctcgattacctgggagagcacttcagggtcaagttaaacctacctgagtggtacacaaac
gaacagtgcgccaacatcctcctgaacgaatgcatctgtatccacctgaagtccgacgca
gagaagttctacctgctttgtctcatgacccggaagctcttcgcgtacgccaagcaggag
tgcatggaggagaaccccgacagcatcacgtgccacgaagtgctcactcctggtcagctc
tacctcatgttcctgaaggaacgcctgactgcgtggttggtgtctgtgaagctgtccttc
gacaaacgaggatccaaactgtctggaggatggagcacagagaacgtgataaagatgctg
aacacgggttcagacatgagcaaagcctttgaatacctgctggccactggaaacctgcac
tctaagactggtcttgggatgctgcagaacacgggtttgtgtgttgttgctgacaaactg
aacttcatccggtacctgtctcatttccgctgcgtgcaccgaggagccgccttcgccaag
atgaggaccacctcggtccggaagctgctgcccgagtcctggggcttcctgtgtcccgtc
cacactccggacggagagccgtgtggactcatgaaccacatgaccgccagctgtgaaata
gttgcacccaccacactcacaacgtccctgccggctctgctctgctcccttggtgtgacc
ccggtggacggacctcctggccgagccttttcagactgctaccctgtggttctggacgga
gccgtggttggctgggtggagagtgatttagctccaaccgttgttgagtcgctgcgcagg
ttcaaggtacaagaaccgtttgaatccnatcagacgtcacctgtccgatttgtgactaaa
tttaaaacctccctccaggtgctgggagaaaagaaaactcctccgtggacagagatcgtt
cttgttcccagaacgggcaaagctagcttatatccgggcctgttcctgttcacgacgccg
tgccggatgatgcgacccgtgcagaatttaactcacggcaaacaggagctgatcggcacc
tttgaacagctttacatcaacgtggggatcttggaggatgagatcgaagcaggggtgacc
actcaccaggagctgttccctcacagcatgctcagcgtggtggcgaacttcatcccctac
tcggaccacaaccagagtcccagaaacatgtaccagtgtcagatggggaagcagacgatg
ggttttcctctgcactccttcacggatcgctccgataacaagctgtaccggctccagacc
cctcagagcccgctggtccggccctacatgtacgaccattacagcctggacaactacccg
agcggcaccaacgccatcgtggccgtcatatcgtacacaggctacgacatggaagacgcc
atgattgtgaacaagtcatcgtgggaaagaggtttcgcccacggaagcatctacaagacg
gagttagtggacttggcggttaaggtcaggggagaggacagcgtggtgttcgggaccatg
gcaggagacccgaaggtgaatggaaaactggattctgatggactgcctcacatcggatcg
gtgctccggtacggagacccgttctacggctacatcaacctcaacacgggcaaaacccac
gtcaacttctacaagggccaggagatctgtgtcgtcgacaacataaagatttgcagcaac
gactctggctcgggccgtttaaaacgggtctgcatcacggtgaggataccacgaaacccc
accatcggcgacaagttcgccagccgccacggtcagaagggcatcctgagccgcctctgg
ccggcggaggacatgccgttcacggagagcggcatgactccggatatcctcttcaaccct
cacggttttccctcccggatgacgatcgggatgctgatcgagagcatggccggaaagtcc
gccgccctgcacggcctgagccacgatgccacgcctttcaccttctccgaggagagctcg
gcgctcgagtacttcggcaaaatgctccgatccggcggctacaactactacggcacggag
cggctgtacagcgggctgagcggccaggagctggaggcggacatcttcatcggcgtcgtc
tactaccagcggctgcgccacatggtctctgacaagttccaggtgagaaccaccggcgcg
cgagacaaggtgaccaaccagcccgtgggaggcaggaacatccagggaggcattcgtttt
ggggagatggagcgcgacgccctgctggctcacggctcttccttcctgctccacgatcgc
ctgtttaactgctcggaccgctcggtggctcaggtgtgcgtggactgtggcagcctcctg
tccccgctgctggagaaaccgccgccctactggtcggccatgcgccaccggaagaccacc
tgcactctgtgtggcaagagcgactccatcgactcggtggccgtcccgtacgtcttccgc
tacttcgtggctgagctcgcagcgatgaacatcaaagtcaaattagacatgaagtga
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