Kryptolebias marmoratus (mangrove rivulus): 108247238
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Entry
108247238 CDS
T05608
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108247238 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108247238 (taf4a)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108247238 (taf4a)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108247238 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
108247238 (taf4a)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108247238 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108247238
NCBI-ProteinID:
XP_017290694
LinkDB
All DBs
Position
LG4:22115274..22129062
Genome browser
AA seq
834 aa
AA seq
DB search
MDASKASTDSKTGRDPAKALVGDGVTFLPNHPGKVGSYSVQTFNGNQTMNSHSPGSAAPA
AGTTATSGGGGGGGVISAPAVSGCTVLSKVPPASSNSVIQTPLMNPESVAAGQPASHASP
GLTVTLVRPPMQTAGSGATLNGSNVAIPAAAARTQPGGSAAVSAGPHVIKAEPPATIMQS
APQPTPGTISAQRPPVMASASAGGATAQMLTPRLPQPSPGQPSVHNIQLHPASGMVLVRS
ESGHLLMFAPQTLAQMQTQAQGGMAPRTATPTNVSTGQAPGNAIISRQVSPSTIIRQGCP
APAPLTVTTTLHRPPLLAGSVGATVPGMTPRTLSQTAGTTVTSVTVSKETMENVKKCKNF
LSTLIKLASSGNQSTETAASVRELVKELLEAKLEAEEFTSRLYKELNSSPQPYLVPFLKR
SLPALRQLTPDAGAFIQQSQLPQPASGPAAAPGPVPSASPTSTAVVVGSPAPRLTAPVCR
PQLQPAISNPGQTTSLVLQPQQQRAILRPQVTLPTTPMMALRNQAPGRIVLGHPQVQLKE
LQPVPLRPEAPLVSKQVSAAALTQAQKNKLNQAGSTFKDDDDINDVASMAGVNLSEESAN
ILATNSGLVGSVTHSCKDEAFLSCAVLQRRMLEIGRKHGVTELGTDVANYISHAAQHRLR
DLLEKVSQVAQQKNGNFKEDDSCKQISDVRAQLKFFEQLDQLEKQRKEEQEREILLKAAK
SRARQEDPEQLRLKQKAKEMQQQELAQMRQREANLTALAAIGPRKKRKNLDSPSSSASAE
GSGPGSSLTGGAGSSGSRPSRQCITRVNLRDLLFCLENERFTSRSHFLYKGFLK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggacgcatcgaaagccagcaccgactccaaaacgggacgcgacccggccaaagcactt
gtcggtgacggtgtaacttttctccctaatcacccggggaaagtaggctcatactcggtg
cagacttttaatgggaaccaaactatgaactctcacagtccaggaagcgctgctcctgcc
gcggggacgacggcgacgagcggcggcggcggcggcggcggcgtgatctcagccccggct
gtcagcggctgcacggtgctgtcaaaagtgccgcccgcctcgtcgaacagcgtcatccag
acgccgctcatgaacccggagagcgtcgccgcgggtcagcccgcgagccacgcgtcacca
ggactcaccgtgaccctcgtcaggccgcctatgcaaacagccgggtcgggggcgactttg
aacgggagcaacgtcgcgatccccgccgcggcagctcgcactcagcccggcggctctgcg
gctgtcagcgcgggtccgcacgtcatcaaggcagagccacccgccaccatcatgcaatca
gcgccgcagcccacccctggcaccatcagcgcccagcgaccccccgtgatggcgtctgcg
agcgccggaggggcgacggcccagatgctgaccccaagactcccccagccgtccccggga
cagcccagtgtgcacaacattcagctccacccggcttcagggatggtgctcgtgcgcagc
gagtctggacacctgttgatgtttgctccgcagactcttgcccaaatgcaaacgcaggca
cagggaggcatggcgcctcggacggccacacctacgaatgtctccacgggacaggctcct
ggaaacgcaatcatcagcagacaggtgtctccaagcaccatcatccgacaaggctgtccg
gctccagcgccactcactgtgaccaccactctccacagacctcctctcctggcgggctca
gttggggccacggtgccaggaatgacccctcggacgctcagccagacagctgggaccaca
gttacttcagtaacagtgagcaaagagacgatggagaatgtgaagaaatgtaagaacttc
ttgtctacactgatcaagctggcatccagtgggaatcagtccacagagacagcagccagt
gtgagagagctggtcaaagaactgctggaggccaagctggaagctgaagaattcaccagc
agattgtacaaagagctcaactcctcaccccagccatatcttgtgccttttttaaagaga
agcctccccgctttgaggcagctcacgccagacgcaggggctttcattcagcagagtcag
cttcctcagccagcctcaggtccagctgcggctccaggtccagttccctctgcctcaccc
acctccaccgcagtggttgtgggcagcccagcccctcgcctcaccgctcccgtctgtagg
ccccagctccagccagctatcagcaacccgggacagacgacgtcactggttctccagcct
cagcagcaaagagcaattttgagacctcaggtaacgttaccaacgacccccatgatggct
ctgaggaatcaggctcccggccgcatcgtgttgggacacccccaggtacagctgaaagag
ctgcagccagttcccttgaggccggaggcgccactcgtttccaaacaagtctccgctgca
gctttgacccaggctcaaaagaacaagctgaatcaggcgggcagcactttcaaagatgac
gatgacatcaacgacgtggcctccatggccggagttaacctgtcagaggaaagtgctaat
atcctcgccaccaactctggacttgttggctccgtgacacattcctgtaaggacgaggcg
ttcctctcctgcgccgtgctgcagaggagaatgctggagataggtcggaagcacggagta
acggagctgggcacggatgtggcgaactacatctcccacgctgcgcagcaccgactccgc
gacctgctcgaaaaagtctcccaagtagctcagcagaaaaatggcaacttcaaggaggac
gacagctgcaagcagatcagtgacgttcgtgctcagctgaagttcttcgagcagctggac
cagttagagaagcagcgaaaagaggagcaggagcgggaaatcctcctgaaggcagctaag
tctcgagctcggcaagaggatcccgagcagctgcgcctgaagcaaaaggctaaagagatg
cagcagcaggagttggctcagatgagacaaagggaggccaacctgacagctttggcagcc
atcggccccaggaagaagaggaagaacctggactctccatcttcatctgcttcagctgag
ggatcaggaccaggttcctccctgactggtggggctggttcatcggggtccaggcccagc
cggcagtgcatcacgcgcgtcaatctcagggacctgcttttctgcttggagaacgagaga
ttcaccagtcgctcccatttcctctacaagggctttctcaaatag
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