Kryptolebias marmoratus (mangrove rivulus): 108247258
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Entry
108247258 CDS
T05608
Symbol
tnc
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108247258 (tnc)
04518 Integrin signaling
108247258 (tnc)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108247258 (tnc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108247258 (tnc)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108247258 (tnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
DUF7949
Fn3_Dep-1_2nd
Fn3_VIN3
FN3_Tor_3rd
NDNF
fn3_2
EGF
Motif
Other DBs
NCBI-GeneID:
108247258
NCBI-ProteinID:
XP_017290722
UniProt:
A0A3Q3GKN0
LinkDB
All DBs
Position
LG1:2801996..2976473
Genome browser
AA seq
1602 aa
AA seq
DB search
MGIKRFFLSCITAALLLHLSNAGLVKKVIRHRREALMPKKTQENLTLPHPDQPVVFNHVY
NINVPSTSLCLVDLDSPGGTELKHKSPSMDMHNSEHMEQTVDSDNQIIFTHRISIPKQAC
ACNNQLPDMKDILNRLEMLESELSSLREQCGSGAGCCGAQVTGEVSTKPYCNGHGNWSTE
SCSCLCELGWKGPNCTEPECPSDCQDQGRCVDGRCDCFEGFGGDDCGIEMCLLDCGDYGH
CVEGSCLCEDGFIGEDCSQTNCLNNCLGRGRCIEDECVCDEPWTGFDCSELICPNDCYDR
GRCVNGTCYCGEGFTGEDCGELSCPDNCNNRGICVNGQCVCQSDYSGEDCSKITCPKNCH
ERGHCFNGKCICDPGFEGEDCSVLSCPDNCSNKGQCINGECVCDIGYQGEDCSELSCPNN
CLDQGRCVNGHCICDKGYIGEDCSVKTCPKDCLGRGECVDGKCVCFVGFTGKDCSELTCP
NDCLNRGHCLSGQCVCHKGFTGEDCSEKTCPKNCLDRGHCVDGSCVCFEGFTGPDCSEMT
CPGDCQNQGRCEKGVCVCDEGFIGEDCSEVSPPKDLTVVEVSPETVDLSWENEMRVTEYL
ITYVPTAPGGLELDMQVPGDQKVATIQELEPGVEYLISVYAVLSNKRSIPVSARVATHLP
EPEGLKFKSVRETSVEVQWDPLDIPFDGWNLIFRNTKEEDGEILSSLSRPETTFEQSGLG
PGQEYEVKLEVVKNNKRGPPASKNVVTMIDAPSQVDVRDVTETTALVTWFQPVAAVDGVT
IAFWPSLNPLDRHVIELSSTDTQYHLGGLNPDTQYKVSLLARKGEQSSSPVYDFFLTDLD
APRELQTVDLTDEGITLEWKNSQAQVDQYRIKYGPLSGGEHGELLFSPGPKDSTQAKITG
LRPGTEYGMGVTAVKDERESLPATTNAVTALDAPKDLTVAEVTETTMMLEWKRPLAKLDT
YRLVHVSADGHRAEDMVPGSSESHTLKGLIPGMLYTISITAERGRRTSVPAIISAPTEDE
KPVITNVTISDVSWESFLLSWSAEDEAFEAFLIEVTDAETSAEWQNRTVPANARSLALSG
LSPGTWYRVGLYGVYRGTVLNPVFADTITDLGSPRGIRFSEVTDTSATVHWVTPRARVDS
YQVTCVPAHGGNAKTLTVDGSESQIVLPNLTPGVTYEVTIVAIKGQRESEPGSDSVTTAL
DKPRGLTAVNITDTETLLLWQPAIATVDGYVITYSADSVAPVMERVSGNVVEFEMSSLTP
ATHYTVKVYAVRDLAKSAATTTEFTTDVDAPQDLAASNIQTENTMLTWKPPRADITGYIL
SFESAGGTIREVVLSPTAMSYNMAQLTASTEYSVRLQALAGPKRSRVISTTFTTTGVQYR
HPRDCSQTLLNGDKSPGLYTIYLGGDEDQPLQVYCDMSTDEGGWIVFLRRQNGHLEFFRN
WKNYTAGFGDLNDEFWLGLSNLHKITAGGQYELRVDLRDKGETAYAQYDKFSVSEPRSRY
KVHVGGYSGTAGDSMTYHHGRPFSTFDHDNDIAVTNCALSYKGAFWYKNCHRVNLMGRYG
DNSHSKGVNWFHWKGHEHSIEFAEMKIRPSNFRNLEGRRKRS
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atggggataaaaagattcttcttgagctgcatcaccgcagcattgctgctccatctttct
aatgctggcctggtcaagaaagtcatccgacaccgcagagaggccctgatgcccaagaaa
acccaggagaacctgaccctgccccatcctgaccagccggtggtgttcaaccatgtctac
aacatcaacgttccctccacttccctctgcttggtggacctggactctccaggaggcact
gagctcaaacacaagagcccctccatggacatgcataacagtgagcacatggagcagacg
gtggatagtgacaatcagatcattttcactcaccgtatcagtatccccaagcaggcatgc
gcctgcaacaaccagctgccagatatgaaagatatcctgaacagactggagatgttggag
tctgagctgtccagtctgagagagcagtgcggcagcggagcaggctgctgtggtgctcag
gttacaggggaagtgtccacaaagccttactgtaacgggcatggcaactggagtactgag
agctgcagctgcttatgtgaacttggatggaagggccccaactgcacagaacctgagtgt
cccagcgactgccaggaccagggtcgctgtgtggatggcaggtgcgattgctttgagggg
tttggcggggatgactgcggtattgagatgtgcctgttagactgtggtgactacggccac
tgtgttgaagggtcctgtctctgcgaggacggctttattggtgaggactgttcccagacc
aactgcctgaacaactgtcttggtcgcggccgctgcatagaagatgagtgtgtttgtgac
gaaccatggacgggcttcgactgctctgagctcatttgtcctaacgactgctacgatcga
ggacgctgtgtcaatggtacctgctactgtggagagggcttcactggggaggactgtggt
gagctcagttgtcctgacaactgcaacaaccgaggcatatgtgtgaacggccagtgtgtg
tgtcagagcgactacagtggagaggattgttcaaagatcacatgccctaagaactgccac
gagagaggccactgcttcaacgggaagtgcatttgtgatccaggctttgaaggtgaagat
tgctcagtcctttcttgccccgacaactgcagcaacaagggtcagtgcatcaatggagaa
tgtgtttgtgacataggataccaaggtgaagactgcagtgagctctcctgtcccaataac
tgcctagatcagggtcgctgtgttaacggacattgcatatgtgacaaaggctacatcggg
gaagactgcagtgtcaagacctgtcctaaagattgtctaggaagaggggaatgtgtggat
ggaaagtgcgtgtgttttgtaggctttacaggcaaagactgcagtgagctgacctgtcca
aatgactgcttgaaccgaggtcactgtttgagcggccaatgtgtttgtcataaaggtttc
accggtgaggactgcagtgagaagacatgccctaagaactgtttagacagaggacactgc
gttgatggtagttgtgtgtgttttgagggttttacggggccagactgctctgaaatgaca
tgtccaggagactgccaaaaccagggacgctgtgaaaagggagtgtgcgtctgtgatgag
ggtttcattggggaggactgctctgaagtttcaccacccaaagacctaactgtagtggag
gtcagccctgaaaccgtggacctgtcctgggagaatgagatgcgtgtgacagagtacctc
atcacctatgtgcccactgctcctggaggtctcgagcttgacatgcaggtgcctggggac
cagaaggtggccaccattcaggagcttgagcctggtgtggaatacctgatcagcgtctac
gctgtacttagcaacaagaggagtattcctgtcagtgctagagtggcaacacatcttcct
gagcctgagggtcttaagtttaagtcagtgcgagaaacttcagtggaagtgcagtgggac
ccactggatattccttttgatgggtggaatctcattttcagaaacacaaaagaggaggat
ggtgagattcttagctcactcagccgcccagagaccaccttcgagcagtctggtctgggt
ccagggcaagagtacgaggtcaaactggaggtggtgaagaacaacaaacgtggaccacct
gcctctaagaatgttgtcacaatgattgatgcccccagccaggtggatgtgcgtgatgtg
acagaaaccactgccctggtgacttggttccagcctgtagctgccgtggacggagtcacc
attgccttttggcccagtttaaatcctcttgatcgacatgtgattgagctgtcctccact
gacacccagtaccaccttggaggcttgaaccccgacacccaatataaggtgtctctgttg
gccaggaagggggaacagagcagttcacctgtgtacgacttcttcctcacagacctggac
gctcccagagaactgcagaccgtggatctgacagatgagggcatcactctggagtggaaa
aatagccaggctcaggtggaccagtaccgcatcaaatacggcccgttgtctggaggcgag
catggagaactgcttttctctccaggacccaaagactccacccaagctaagatcaccggt
ctaagaccaggaacagagtacgggatgggtgtgacggcggtgaaggatgaacgggagagt
ctgcctgccaccactaacgcagtaacagccctagacgctcccaaagacctaactgtagca
gaggtaactgagaccaccatgatgctggagtggaagcgccccttagccaaactggacacc
tacagactggtccatgtttctgctgatggccatagggctgaagacatggtcccaggcagc
tctgagtctcacaccctgaaaggcctgatacccggcatgctgtacacaattagcatcact
gcagagaggggccgcagaaccagcgtacctgctatcatctcagcccccacagaggacgag
aagccagtgataactaacgtcactatcagcgatgtgtcgtgggagagcttcctgttgtcc
tggtctgctgaagacgaggcattcgaggcctttctgatcgaggtcactgatgcagagacg
agtgctgagtggcaaaaccgcacggtgcccgccaatgcccgcagcctcgccctctctggc
ctctcccccggtacctggtatagggtcggtctgtacggggtgtacagggggaccgtctta
aaccctgtctttgcagacaccatcacagacctgggttcacctaggggcatccgtttctct
gaagtgaccgacacatctgccacagttcactgggtgacaccgagagctcgggtggacagc
taccaggtcacctgcgtacctgctcacggaggtaatgctaagacgctgacggtggacggc
tccgagtctcagattgtgctgcccaacctgacgcctggggtcacatatgaagtcactatt
gttgccatcaaaggtcagagggaaagtgagcctggatctgacagtgtcaccacagctttg
gataaaccccgtggtctgacagcagtcaacatcacagacactgagaccttgctgttgtgg
cagccggccatcgctactgtagatggttatgtcatcacatacagtgcagactctgtggct
ccggtgatggagcgtgtatcaggaaacgtggtggagtttgaaatgagctctctgacgcca
gcgacacactacaccgtgaaggtctacgctgtgagggacttggccaagagtgcagccact
acaacagagtttaccacagatgtggatgcccctcaggaccttgcagccagcaacatccag
acagagaacaccatgctcacctggaagcctccccgtgctgacatcactggctacatcctc
agcttcgagtctgccggcggcaccatccgggaggtggtcctgagtcccaccgccatgtcg
tacaacatggctcagctcaccgcctccacggagtactcagtccggctgcaggcccttgct
ggtcccaagagaagccgagtcatcagcactaccttcaccaccactggtgtgcagtacaga
cacccccgggactgctcccagaccctgctgaatggtgacaagtccccaggcctgtacacc
atctatctggggggagatgaggaccagcccctgcaggtgtactgcgacatgagtaccgac
gaaggcgggtggattgttttcctccggcgtcaaaatggccacctggagtttttccgcaac
tggaagaattacacagctggttttggagacttgaatgatgaattctggcttggtctgtct
aacctgcataagatcacagctgggggacagtatgagctgcgagtcgacctcagagataaa
ggagaaactgcctacgctcagtatgacaagttctctgtctccgaacctcgaagccgatac
aaagtccacgtaggaggatacagcgggacagcaggtgactctatgacctaccaccatggg
cgtccattctccacatttgaccatgacaacgacattgctgtcaccaactgtgccctgtcc
tacaagggagccttctggtataaaaactgccaccgggtcaacctgatgggaagatacgga
gataacagtcacagcaagggcgtgaactggttccactggaaaggccacgagcactcaatt
gagtttgctgagatgaaaatccgtccatccaacttcagaaacttggagggacgaaggaaa
cgatcataa
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