Kryptolebias marmoratus (mangrove rivulus): 108247964
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Entry
108247964 CDS
T05608
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108247964 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108247964 (exosc1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108247964 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
108247964 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
108247964
NCBI-ProteinID:
XP_017291890
UniProt:
A0A3Q3EHU8
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Position
LG3:23073187..23078977
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AA seq
232 aa
AA seq
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MVEEPVLLLLPFSSDWPIRIDSSPCLSQWEVGSALLENMSPMKLCVPGDKLCSEEDCIPG
TGVYLRHGYIYSALAGYVLKKNEGEKRPVISVVRETEAQLLPDVGAIVTCKVTSINPRFA
KVQILYVGSTPLKDRFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDIQSNYL
LTTAENELGVVVAHSEAGAQMIPISWCEMQCPCTQAKEFRKVARVQPEYLQA
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagaacccgtccttcttcttcttccgttctcctcagactggccaatcagaatc
gactcgagcccttgcctcagccaatgggaggtgggatctgctctcctcgaaaacatgtcg
cccatgaagttgtgtgttccaggtgacaagctgtgcagtgaagaagactgtattccaggc
accggagtgtacctgcggcacggctatatatactctgcgcttgctggctacgtgctcaag
aaaaatgagggcgagaagcggccggtgatctccgtggtgagggaaacagaagcacagctg
ctgccagatgttggagccatagttacctgtaaggtgactagcatcaaccccaggttcgcc
aaagtccagatcctttatgtcggctccacgccgctgaaggaccgcttcagagggacgatc
agaaaagaggacgtgcgagcgaccgagaaagataaggtggagatttacaaaagcttcaga
cctggcgacattgtcttggcaaaagtgatttctctcggagacattcagtcgaactacttg
ttgacgacggctgagaatgaactgggggtggtggtggcgcacagcgaagcaggcgcccag
atgattcccatcagctggtgtgagatgcagtgcccgtgtacgcaggccaaggagtttcgg
aaagtggcgcgagttcagccggagtacctgcaggcatga
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