Kryptolebias marmoratus (mangrove rivulus): 108248196
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Entry
108248196 CDS
T05608
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108248196
Transcription factors [BR:
kmr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108248196
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
108248196
NCBI-ProteinID:
XP_017292302
UniProt:
A0A3Q3AEJ1
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Position
LG11:complement(4841608..4970562)
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AA seq
765 aa
AA seq
DB search
MMSSMRATPPFHPPSEEAEVIGQDNEAWDGDERDGPKETASPSSHDEPHPDKLQPAREKL
ADAEWENVGPAVMDNESTKGCSVYTYRTNSTSPPKPEECSRDRGEPIIGLTFGTPERRKG
SLADVVDTLKQKKLVELTKTEQDDPSCVERLLSKDWKERVDRLNASELLGEVKGTPEALE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQLL
QQQHKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPGENYPM
QFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPNSSAPLSPSTLKSE
KQASSPVTQIKEEGSTQPLNLSARPKTAEPLRSPSSPTQSLFSGNKASPPSMGRNTSLDI
LANLNSTALFGDQDAVMKAIQEARSMREQFQREQLHHQQQQQQPGHQSLEAKLSALSSMS
LNNSNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSNVTEARVFREARGRNN
NEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMTNQEKQPYYEEQAR
LSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQEMRQFFVGPQPQISLGN
SPGGVGVYPGAITMATATPSPHLTSDCSSNSVSPEPNIPVIQSTYGVKSEPSGGGASNGG
GVGALDLPSDPTNGDDDMDMYEDFDDEPKSDYSSDHETREAVSAN
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaactcctccctttcacccaccgtctgaggaggcggaagtg
attggtcaggacaacgaggcctgggacggcgacgagcgcgacggcccaaaggagacggca
tcgccttcttcgcatgatgagccccacccagacaaacttcagcctgccagagagaaactg
gcagatgcggagtgggagaacgtcggccctgctgtgatggacaatgaaagcaccaagggc
tgctcagtctacacctaccggactaactctacctctccacccaaaccagaggagtgttcc
agggatcgaggcgagcctatcatcggcctcacatttgggacaccagagcgtcgcaaggga
agcctagcagacgtggtggacactctgaaacagaagaagctcgtggagctgaccaagaca
gaacaagatgacccatcttgtgtggagaggttactttccaaggactggaaggagcgtgtg
gaccgtcttaatgccagtgaactactgggggaggttaaaggtacgccagaggccctggag
gaaaaggagcgccagctttcgaccatgattggtcagctgatcagtctgagggagcagctt
cttgccgcccacgatgagcagaaaaagatggccgcctctcaactggagaagcagaggcag
cagatggagctggccaggcagcaacaggagcagattgctcgacaacagcagcagctgctg
cagcagcagcacaagatcaacattctccagcagcagatccaggtccagggtcacatgcct
cctctgatgatcccggtgtttccacacgaccagcggtctctggccgctgctgccgccgca
cagcaaggcttcctcttcccacccggcatgtcctacaagccaggtgagaattacccaatg
cagttcattccctcaacaatggcagctgcagcggcgtctggactcagcccgctacaacta
cagcagctgtatgctgcgcagctggcaagcatgcagatctcaccaggagccaagatggct
cccctcccacaggctcccaactcctcagctcctctctccccctccaccctcaagagcgag
aaacaagcatctagccccgtcactcagattaaggaagaaggatccacacagccattaaac
ctttcagccagacctaagacagctgagcctctacgctccccatcgtctcctacccagagt
ctgttctctgggaacaaggccagccctcccagcatgggcaggaacacctctctagacatc
ctggccaaccttaactccacagcgttgtttggggaccaagacgcggtgatgaaagccatc
caggaggccagaagcatgagagagcagttccaaagggagcagctccaccatcagcagcag
cagcagcagccaggacaccagagtctagaagccaaactgtctgcactcagcagcatgagc
ctcaacaacagcaacaaggagcgactgcactatgagacgctgagtcagcacctcgggaag
ctcggggaggatgctgggaagatggtccatcgagtcattgacctgacaagaccagaggat
ctggatgggagtaacgttactgaggcacgagtgttcagggaggcaagggggaggaacaac
aatgagccccacatcaagaggcccatgaatgccttcatggtttgggctaaagacgagcgg
aggaagatcctgcagaccttccccgacatgcacaactccaacatcagcaagatcctgggt
tctcgctggaaagccatgaccaatcaggagaagcagccatactacgaggagcaggcccgc
ctgagcaagatccacttggagaaatatcccaactacaagtacaagccgcggcccaagaga
acctgcatcatcgacggcaagaagctgcgcatcggagagtacaagcagctgatgcgctca
cggcgtcaagagatgaggcagttttttgtggggcctcagccacagatttctttgggcaac
agcccaggaggcgtaggagtttacccaggtgcaataactatggcaacagccacaccatcc
ccacacctgacctcagactgctcaagcaactcagtcagccccgaacctaacatccctgtc
attcagagcacgtacggggtgaagtctgagcccagtgggggcggagccagcaatggaggt
ggggtcggagctttggatctgcccagcgaccccaccaatggagacgacgacatggacatg
tacgaggactttgacgatgagcccaaatcagactatagcagcgaccacgagactcgggag
gctgtcagtgccaactga
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