Kryptolebias marmoratus (mangrove rivulus): 108248490
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Entry
108248490 CDS
T05608
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108248490 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108248490 (msh2)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108248490 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Med28
Motif
Other DBs
NCBI-GeneID:
108248490
NCBI-ProteinID:
XP_017292783
UniProt:
A0A3Q3AW00
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Position
LG17:complement(20898726..20909926)
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AA seq
934 aa
AA seq
DB search
MAVQPKQNLSMDGAAEHGFLNFVFSMPEKPDTTFRIFDRNDYYTVHGKDAMFAAKEVFKT
NGVIKYLGSGSRRLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIDYKA
SPGNLTQFEEILFGGGTGAEVCAGVVAVRLATGADGQRVVGVGYVDAAQRKMGVCEFPDS
EIFSNLESLLVQIGPKECLLAQGESGADGNKLREVVQRGGMLVSDRKKAEFNSKDIVQDL
NRLLLSKRGETAASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLQLGQYMR
LDHAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVDGFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVHQAVSQLPGLVAAL
DRYSGSYQVLLQAVFTSPLRDLQTDFTKYQEMIETTLDMNQIEHHEFLVKASFDPVLSEL
REKMDALEKSMQAALSSAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQALNDVVAQ
LDAVASFAVAAVSAPVPYVRPRILDGGCRRLELLQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATESSLIIIDELGRGTSTYDGFGLAWAISEHVASKIGCFCLFA
THFHELTALAMQQPTVHNLHVTALTSHNTLTMLYRVRAGVCDQSFGIHVAELACFPASVL
AVAKEKAEELEEFQEPAGDHLKQEGEPEAKRRRTDKQEGEDLIQDFLQKVKCLPVATMTE
EEVKEELRRMKQELVSKNAYISGLLARCVSVKTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctctccatggacggcgcggccgagcacggcttcctg
aacttcgtcttctccatgccggagaaaccggacaccacgttcaggatattcgaccggaac
gactactacaccgtgcacgggaaggacgccatgtttgctgcgaaggaggtgttcaagacg
aacggggtcatcaagtatttgggctcaggaagtcgccggctggagagtgtgatcctgagc
aagctgaacttcgaagcctttgtgaaggacctgctgttggtaaggcagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaggagcacgactggaggatcgactacaaggcc
tctccgggaaacttgactcagttcgaggagattctgttcggcggcgggaccggagcggag
gtctgcgccggcgttgtggcggtgcggctggcgacaggggccgatgggcagcgggtggtc
ggggtcggctacgtggacgcggcccagaggaagatgggggtgtgcgagttccccgacagc
gagatcttctccaacctggagtcgctgctcgtccagatcggccccaaagagtgcctcctg
gcgcagggcgaaagcggcgccgatgggaacaagctgcgggaggtggtgcagcgaggcggc
atgctggtttctgacaggaagaaagccgagttcaacagcaaggacatcgttcaggacctc
aacaggctgctgctgtcgaagagaggagagacggcggcgagcaacacgctaccagaactg
gacaagcaggtggccatgtcgtgtttggctgcagtggtgcgcttcctcgagctgctctct
gacgagtccaacttcaactccttcagtctcaccacgctgcagctcggtcagtacatgagg
ttggaccacgctgccgtcagggctctcaacctcttccagggttcccctgatgacaccagc
ggagctcattcattggccggcttgttgaacaagtgtcgaactccgcaggggcagaggctg
gtcaaccagtggatcaaacagccgctcatggacaaaaccaaaatagaggagaggctggac
ctggtggacgggttcgtgtgcgactcggagctacggcagacttgtcaggaggacctgctg
cgccgcttccccgaccttcaccgcctggccaagaagttccaccgtcacactgcgaccctg
caggactgctaccgcgtccaccaggccgtgagccagctccccggcctcgtggcggcgctg
gacagatactccggcagctaccaggtgttgctgcaggcggtgttcacctctcctctcaga
gacctgcagacagatttcacaaagtaccaggagatgattgaaaccacgctggacatgaac
cagatcgaacaccacgagttcctggtgaaggcgtcgtttgatccggttttgagtgagctg
agagaaaagatggacgccctggaaaaaagcatgcaggctgcgctgagcagtgcagccaga
gaattaggtctggaagccggtaagacggtgaagctggagtccaacgccgtgctgggtttc
tacctgagggtcacgtgcaaggaggagaagagcctgaggaacaacaagaagttcaccacg
ctggacgttcagaagaacggcgtccgcttcacaaacagcaagctgagctctctgaatgag
gagtacacgaagagcagggaggagtacgaggaggcccagaacgccatcgtcaaggagatc
attaacatcgcctcaggttacgtggatcccctgcaggcgctgaatgacgtcgtggcgcag
ctggacgccgtggcgagtttcgccgtggcggccgtttccgctcccgtcccttacgtccgg
ccccggatcttagatggcggctgcaggcgcttggagctgctgcaggctagacatccctgc
atggagacggacgccgacaccgccttcataccgaacgacatcaccttcgtccagggcgag
aagagcttctacattataacgggaccgaacatgggcggcaagtcgacgttcatccggcag
gtgggattgatcgctttgatggcgcagattggctgcttcgtgccatgtgaaaaggcggag
ctaagtgtgattgacagcgtcctggctcgagtgggagctggagacagccaggtgaaaggg
gtgtccaccttcatgtctgagatgttggagaccgctgccattctgcgctcagccacggag
agctcgctcatcatcatcgacgagctcggccgagggacgtccacgtacgacggcttcggg
ctggcctgggccatcagcgagcacgtcgcctccaagatcggctgcttctgcctgtttgcc
actcacttccacgagctgacggcgctggcgatgcagcagcccaccgtccacaacctgcac
gtcaccgccctgacgtcccacaacaccctcaccatgctgtacagagtcagagcaggcgtg
tgtgaccagagcttcgggatccatgttgccgagctggcgtgcttccccgcgtcagtgctg
gcggtggcgaaggagaaggcggaggagctggaggagttccaggaacctgcaggggatcat
ctgaagcaggagggggagccggaggccaagagacggcgcacggacaaacaagagggagaa
gatctgatccaggacttcctgcagaaggtgaagtgtcttcctgttgccaccatgacagag
gaggaggtgaaggaggaactcaggagaatgaagcaggagttggtgtccaagaacgcgtac
atcagtggcctcctcgctcgctgcgtttctgtaaaaaccgcctaa
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