Kryptolebias marmoratus (mangrove rivulus): 108248544
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Entry
108248544 CDS
T05608
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108248544
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108248544
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108248544
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ion_trans
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
108248544
NCBI-ProteinID:
XP_017292868
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Position
LG2:2793871..2801185
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AA seq
776 aa
AA seq
DB search
MDKTDISEMDTIVPIGPMESPESQPPTTKSKNTDNIKEYTKDALFKAASEGYVSQLDGLL
EFLQRNKKKLIDFRESDGKTVLTKALLNLKDGKNDTIEFFIDTVEKNEDLKEFINAPFNN
ETDAEGQTALHIAIERRNLEYVKLLVEKGADLNAKASGPFFQRHYEGGFYFGELPLSLAA
CTNQPEIVSFLMNNPKNKADATAQDSRGNTVLHALVIATDKETENMTENTENITKLYDYI
LTEHYKSEKSKKSEKNQQDELESVETSDCQTLLNSYSNKSESEKTEVSYLESIENNKGLT
PLKLAAKLGRFGMLKHIMNREFLDEETKPLSRKFTEWSYGPVHSSLYDISSIDIVEPNSV
LEIILFRSKKPNRPQMLQIEPLRSLLYEIWNSYAYIIFWMNFGIYLIYLAIFTSVAFHRK
DGEPPFAVENTPSDIFHCIGQIISVLGAIWFLSKSIQNFKRHFLNNNSLLIDGFVEFLFF
LQASLLLVAVVLYFCGREEYVGLLVLSLALAWVNTLYYARGSKQLGIYNVMMQRMILGDL
FQFLCIYSVLLFGFSAAVVTLIGDRLADKKKQNSTLTPDDFSGEASECGKPSYSEFHFTL
MEMFKFTIGMGNLDFTDDVEYKQVFYILLVGYVVLTYILMLNMLIALMGNTVQNTTEQSE
NIWNLQRAFATLDMERSLPVWLRRKLHFSRLGPKCYEKNEDKNKDPSFFRVIEKDWKKWK
SGLRKQLKENPVKTVQKRNLHGIVKDFHRRLRNDQPDGNGNHNNKDGSLLEENIPK
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggataaaacagacatctcagagatggacacaatcgttccaattggcccaatggagtca
ccagaaagtcagccccccacaacaaaatcaaaaaatacagataatatcaaagaatacaca
aaggatgcactgtttaaggcagcatctgaggggtacgtatcgcaacttgatggcctgttg
gagttcctgcaacgcaacaagaagaaacttatagattttagagaatctgatggaaaaaca
gtcctcacaaaagctttgctgaacctgaaagatggaaaaaatgacacaattgaattcttc
attgacacagtggagaaaaatgaagatttaaaagagtttatcaatgcacctttcaacaat
gaaactgatgccgaaggtcagacagccctacacattgccatagagaggagaaacttggaa
tacgtgaaactgctggtcgagaaaggagcagatttgaatgccaaagccagtggcccgttt
ttccagcgtcactatgaagggggcttttattttggggagcttcctctgtcactggctgca
tgcacaaaccagccagaaattgtgtcatttctcatgaacaaccctaaaaacaaagctgat
gcgacggcccaagactcacgaggaaatactgtgctgcacgctttggtgatcgcaacagat
aaagaaacagaaaacatgacagaaaacacagaaaacatcacaaagctgtatgattacatt
cttactgagcactacaaatctgagaaatctaagaagtctgagaaaaaccaacaagatgag
ttggaatctgttgaaacatctgattgtcaaactctcctaaactcatatagtaacaagtct
gagtctgagaagactgaagtcagctacttggaatccatcgaaaacaacaaaggtctgact
cctctgaaactggctgccaagctcggcaggtttgggatgttgaagcacataatgaatcgg
gaatttttggatgaagagacgaagccgctgtcgaggaagttcacagaatggtcttatgga
cctgttcactcttctctttatgacatcagctccattgacattgttgaaccaaattctgtg
ctggagataatcctcttcaggagtaaaaagccgaatcgtcctcagatgcttcagatcgaa
cctctacgcagtcttctttatgaaatatggaacagctatgcttacataatattctggatg
aattttgggatttatttgatttacctggccatcttcacctctgtggctttccataggaag
gatggagagccaccatttgcagtcgaaaacactccatctgacatcttccattgtattggt
cagatcatcagtgtcctgggagcaatctggtttctcagtaaatcgatacaaaatttcaag
agacattttctaaacaacaacagtctgctcatcgatggatttgttgaatttttgtttttt
ctgcaggcatccctcctcctggtggcagtagttctgtatttctgtggacgggaggaatat
gtcgggctcttggtgctatctctagctcttgcctgggtgaacactttgtattatgcaaga
ggatccaagcagctggggatatacaacgtcatgatgcaaagaatgatcctgggtgacctg
tttcaatttctatgcatctacagtgtcttgctctttggattttctgcagctgttgttact
ctcataggtgacagacttgcagacaaaaaaaaacaaaactcaacactgacaccagatgac
ttctctggtgaagcatccgagtgtgggaagccaagttatagtgaattccattttacatta
atggaaatgttcaagttcactattggaatgggaaatctggatttcactgatgatgttgag
tacaaacaagttttctacatcctgcttgttggatacgtagtgcttacctacatcctgatg
ctcaacatgctcatagctctgatgggaaatacagtccaaaatactactgaacaaagtgaa
aacatctggaacctgcagagagcattcgcaactttggacatggagcggtctctaccagtg
tggctgagacgtaagctgcatttcagcagattggggcctaaatgctatgaaaagaatgaa
gataagaataaggatcctagctttttcagagtgattgaaaaggactggaagaaatggaag
tcaggtcttcgcaagcagcttaaagaaaaccctgtaaagactgtccagaaacggaatttg
catgggattgtgaaggattttcatagaagactcagaaatgatcagccagacggtaatgga
aaccataacaacaaagatgggagtttgttggaagaaaatatcccaaaatag
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