Kryptolebias marmoratus (mangrove rivulus): 108248788
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Entry
108248788 CDS
T05608
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108248788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108248788
03009 Ribosome biogenesis [BR:
kmr03009
]
108248788
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108248788
Spliceosome [BR:
kmr03041
]
Complex A
U1 snRNP components
U1 related factors
108248788
Complex B
108248788
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108248788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
108248788
NCBI-ProteinID:
XP_017293256
UniProt:
A0A3Q3FR29
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All DBs
Position
LG3:complement(4407891..4415932)
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AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPSRFGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQK
NFYQEHPDVTRRPLQEVDQYRRSKEVTVKGRDCPKPMIKFHEAAFPSYVMDVIVKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAVVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSGYRDRDSDRGFGGGPKTAFGGSKAQNGS
NYGGNSGNSNGSYGNNNYNNSNGQGNFSGPPNQGGFGNQGFQAPPQFGGMPRAAQNGVNH
PPFPFNSQPPPPQNQQPPPPPPMAPYPMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcttttccgacagagaccgtgggagagatagaggatatggcggcggcccttct
cgttttggtggaggaggtggaggcaacaggggaggaccccctccaggaaagtttggcaac
cctggtgaaaggctgcgaaagaggcactggaacctcgacgagcttcccaagtttcaaaag
aacttctaccaggaacacccagatgtcacacgtagaccacttcaagaggttgatcagtat
cgcagaagcaaagaggttacagtcaaaggcagagattgcccaaaaccaatgataaaattc
cacgaggctgcatttccaagctacgttatggatgtcattgtcaagcagaactggaccgaa
ccaactccgatccagtctcaggggtggcccgtcgccctgagtggaaaagacatggtcggc
atcgctcagactgggtctgggaaaaccctggcataccttctgcctgcagtcgttcatatc
caacatcagcctttcttggagcatggagacgggcctatttgcttagtgctggcaccaacg
cgtgagctggctcagcaggtgcaacaggtggctgctgaatatggccgggcctctcgtctc
aagagcacctgcatctacggaggcgcacccaaaggaccgcaactcagggatctcgagagg
ggtgttgagatctgcatcgctacccctggtcgtcttattgattttctggagtgtggtaaa
acgaatttgcgtcgctgcacctatctggtgctggatgaagctgaccgcatgctggacatg
ggctttgaacctcagatccgcaagatagtggaacaaatacggccagaccgtcagactctg
atgtggagcgccacttggcctaaggaagtacgtcagctggctgaggacttcctgaaggac
tacgtccagatcaatattggcgccctgcagctcagcgccaatcacaacatcctgcagatc
gttgacgtttgcaatgacctagagaaggaggacaaactgattcgtttactggaggagata
atgagtgaaaaggagaacaagaccattatttttgttgagaccaaaagacgatgtgatgag
cttactaggaggatgagaagagatgggtggcctgcaatgggaatccacggagacaagagc
cagcaagagagggactgggtccttaatgagttcagatatggcaaagctccaattctcatt
gccacagatgtggcgtcccgtggcctagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccatcgcattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagcaggcgacctg
atctctgtgctccgcgaggccaaccaggccatcaaccccaagctgatccagatggcagag
gacagaggaggtcgtggccgggggggaagaggtggctacaaggatgaccgtcgcgatagg
tattctgggggtgggagaagtaactttggtggtagcggctatagagacagggacagtgat
agaggttttggcggtgggccgaagaccgcctttggtggcagcaaggcccaaaacggcagc
aattacggaggcaacagtggtaactctaatggtagctatggcaacaacaattacaacaac
agcaacggacagggtaattttagtggtccaccaaaccaggggggctttgggaaccaaggt
ttccaagccccacctcagtttggtggcatgccgagggctgctcagaatggcgtgaatcat
ccgccattcccgttcaactctcagccaccgccaccacagaaccaacagccaccaccccca
ccgccaatggcgccctaccccatgccgccacctttcccacagtag
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