Kryptolebias marmoratus (mangrove rivulus): 108248967
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Entry
108248967 CDS
T05608
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X3
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr02010
ABC transporters
kmr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108248967 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108248967 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
kmr02000
]
108248967 (abca1b)
Transporters [BR:
kmr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108248967 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
108248967
NCBI-ProteinID:
XP_017293543
LinkDB
All DBs
Position
LG9:complement(29584789..29617981)
Genome browser
AA seq
2295 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILITVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNAHNPCFKNTTPGESPGVVGNFNDSIISRLFSDVKKILLYSQNDK
NLEGFKELAWALDTLQSSRSGFKLKHFLQDNETLSSFLLRNASLRPHTVQQITEANVNLE
KVLLRGLGVHLKDMCPWNGGNQNLSDFVTILDQQVLSEVQLIICEAEPEWLDHAEENFMS
NLDFFKPIRRDVRSDPEAVQQVARATNNLLDSLGSLAVELAGMKSWVDLRNEILFLMQNA
TSSPSAMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDEASALYDNSST
PFCNSLVRNMDSNPMSRMIWQALKPLLLGKILYTPHTPATQRIIHEVNRTFQELGVFRDL
GGMWEEMRPKVWDFMENSQQMNLIRTLLKNNITATFFHAQLATTDWTVADVTNFLSNRPS
EQLGGALTWKEVFNETDQAIMSISRFMECVNLDKLEPVSTEERLVNQSMLLLEDRKFWAG
IVFHNITPNSTELPAKLDYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFLY
LQDVIEQAIIRALTGTREKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSII
LKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLVPLLISAGLLVLVLKKGNLLPYSDP
GIIFLFLGSYAVVTIMQCFLISTMFGRANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGA
KVFASLLSPVAFGFGCEYFALFEEQGVGIQWENLVSSPLQEDEFSLRTTIIVMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWYFPFTRSYWFGDDGKSSKVPLNRKGNASAVCVEEEPTHL
EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKGEIEHI
LQDTGLPHKRRSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKDPE
PSLSSCRNSSSTVSFTKKDEESSSVSSSDAGLGSEHESEAATIENGPAVSICTATNPFVP
PDTSLVSALILRHVQAARLVEDQGHELTYVLPYSAAKDGAFVELFKDLDLKLHELGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTVPVRRRRRTHAFGGGDHQSCLRPIPEDDSNE
CNDSDGDADCRETDWLNCTDGKGSYQVNGWSLKRQQFVALMWKRFLYARRSRKGFFAQIV
LPAVFVCIALIFSLIVPPFGKYPRLELQPWMYEDQVTFISDDAPGDANMQKLLNALMDPP
GFGTRCMDGYSIPEAPCTMGDEDWHTPNVPESVQQLFSSRNWTMENPSPDCYCTTGGKKR
MLPDCPEGAGGLPPPEIKMSATDTLQNLTGRNISDYLVKTYSQIIGKSLKNKVWVNEFRY
GGFSLGARSMQVLPPANEIDDAIERVRNVFKLQKGAAADRFLDNLSGFINGLDTKNNVKI
WFNNKGWHSVAAFINVMSNGILRANLPPGEEASRYGINAFNHPLNLTKEQLSQVALVTTS
VDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVHPLLYWLANFMWDMLNYFV
PAILVILIFICFQQKAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTS
INILIGINGSISTFVMELFGDHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADAL
ERFGENRFRSPLEWDMVGKNLLAMAVEGVVFFIITLLIQYRFCIKPRPVSKLTKLGPLGE
EDEDVARERHRIVQGLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGA
GKTTTFKMLTGDTMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLELY
AILRGVPEKEVCDVAEWGIRKLSLLKYADKRAGSYSGGNLRKLSTAISLIGAPPVVFLDE
PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQH
LKNRFGDGYTIILRVAGPNPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAHI
FSILAKNKDTLRIEDYSVTQTTLDQVFVNFAKDQSDDYVSKDASVRRKDVAINIAALSPA
HGAAEGGGEQRESVM
NT seq
6888 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctccactcagctgggtctgctgctgtggaagaacttcacctacagacgaaga
cagacgctccagctcctggtggaaatcatctggccgctcttcatcttcttcatcctcatc
accgtgcggctgaactaccctccgtatgagcagcatgagtgtcattttcccaacaaggcg
atgccgtcggctggaacgctgccctggctgcagggaatcctctgcaacgcccacaacccc
tgcttcaagaacaccacgccgggagagtctccgggtgtcgtgggaaacttcaacgactcc
ataatttctcgcctgttttcggacgtgaagaagatcctgctgtacagtcagaacgataag
aacctggagggcttcaaggagctggcctgggccctggacacgctgcagagcagccgctca
ggcttcaagttgaagcatttcctgcaggacaatgagactctgtcgagctttctgctgagg
aacgcctctctgcgcccgcacaccgtccagcagatcactgaggccaacgtcaacctggag
aaggttctcctcagaggtttgggggtccacctgaaggacatgtgtccctggaacggtggg
aaccagaatctgtcggactttgtgaccatcttggaccagcaggtgctctcagaggtgcag
ctcatcatctgtgaggcggagcctgagtggctcgaccacgctgaggagaacttcatgagc
aacctggacttcttcaaaccgatccggagggacgtccggtcggacccagaggccgtccag
caggtcgccagggccaccaacaaccttctggacagtctgggttccctggctgtggagttg
gcagggatgaagagctgggtggatctgaggaacgagatcctcttcctgatgcagaacgcc
acctcatcgcccagcgccatgtaccaggcggtctccaggatcgtgtgcggtcaccccgaa
ggcggcggtcttcagatcaagtctctgaactggtacgaggacagcaactacaaggcgctg
tttgggaaccacaacagcagcgaggacgaggcctcagcgctctacgacaactcctccact
ccattctgtaacagcctggtgaggaacatggactcaaacccgatgtcccggatgatctgg
caggctctgaagcctcttctgctggggaagatcctgtacaccccccacacccccgccact
cagaggatcatccacgaggtgaaccgcaccttccaggagctcggtgtgttcagggatctg
ggtggcatgtgggaggagatgagacccaaagtctgggacttcatggagaacagccagcag
atgaacctgatcaggacgctgctgaagaacaacatcacagccacgttcttccacgctcag
ctcgccaccactgattggacggtggccgatgtgacaaacttcttgtccaatcgtccgtca
gagcagctcggcggcgccctcacctggaaggaggtgtttaacgagaccgaccaggccatc
atgagcatctcccgcttcatggagtgtgtgaacctggacaagctggagccggtctccact
gaggagcggctcgtgaaccagtccatgctgctgctggaggacaggaagttctgggcgggg
atcgtgttccataacatcactccgaactccaccgaactcccggcaaaactcgactacaag
atccggatggacatcgacaacgtggagcggaccaacaagatcaaagacgcgtactgggac
ccaggtcctcgtgccgacccgtttgaggacatgcggtacatctggggcgggttcctgtac
ctgcaggacgtgatcgagcaggccatcatcagagcgctgacgggcaccagggagaaaacc
ggagtgtacatccagcagatgccgtacccctgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgcctctcttcatgacgctggcctggatgtactcggtgtccatcatc
ctgaagagcgtggtgtacgagaaggaggcccggctgaaggagaccatgaggattatgggt
ctggataacggcatcctgtggttcagctggttcatcagcagcctggttcctctgctgatc
agcgccggactgctggtgctggtgctcaagaagggaaatctgctgccttacagtgaccca
ggcatcatcttcctcttcctggggtcctacgctgtggtcaccatcatgcagtgtttcctc
atcagcaccatgtttggtcgcgccaacctggctgccgcctgtggaggaatcatctacttc
accctctacctgccatacgtcctctgtgtcgcctggcaggactacattggctacggagcc
aaagtctttgctagcctgctgtctcctgtggcgtttgggtttggctgtgagtactttgcg
ctgtttgaggaacagggagtcggtatccagtgggagaacctggtgtcgagtccccttcag
gaggacgagttcagcctccgcaccaccatcatcgtcatgtactttgactccttcctgtat
ggagtcctcacctggtacatcgaagccgtgtttccaggtcaatacgggatccctcgaccc
tggtactttcccttcaccaggtcctactggtttggagatgacgggaagtccagtaaagtc
cctctgaaccggaaaggaaatgcttcagctgtgtgtgtggaggaggagccaacgcacctg
gagccaggagtctacatcgagaatctggtgaaggtctaccgtcacggtaaaaagctggcc
gtggacggactgacgcttggattctacgagggacagatcacgtcattcctgggacacaat
ggagccggaaaaaccaccacaatgtccatcctgaccggcctgttcccgcccacctctggc
accgcctacatcctgggtaaagacatccggtcggagctgagtgccatcagacagagtctg
ggtgtctgtcctcagcacaacgttctcttcagcatgttgaccgtagaagagcacatctgg
ttctacgcccggctcaaagggctgtcagaagagcaggtcaaaggtgagatcgagcacatc
ctgcaggacacggggctgccgcacaaacgcaggtccaggaccagcactctgtcggggggc
atgcagaggaagctgtcggtggctctggcctttgttgggggatcaaaggtggtgatcctg
gatgagcccacagccggcgtcgacccgtacgcccgcagagggatctgggacctgctgctg
aagtacagacagggtcggaccatcatcctgtcaacgcaccacatggacgaggcggacatc
ctgggcgaccgcattgctatcatctcccacggaaagctgtgctgcgtgggctcctctctg
tacctgaagaaccagctggggactggctactacctgaccctggtgaagaaggacccggag
ccatcactcagctcctgcaggaactcgtccagcactgtgtccttcaccaagaaggatgag
gagagctcctcggtcagcagcagcgatgcaggactcggcagcgaacatgaaagtgaggca
gccaccatcgagaacggcccagcagtgtccatctgcaccgccaccaacccctttgtccca
ccagacacatccctggtgtcggcgctgatcctgaggcacgtccaagccgcccgcctggtg
gaggaccaggggcacgagctgacctatgtcctgccgtacagcgccgctaaggatggagct
ttcgtggagctctttaaagacctggacctaaagctgcatgaacttggcatctccagctac
ggggtgtctgacaccacactggaggagattttcctaaaagtggctgaagataatggagtt
gacactgaagtaccttcagatggaaccgttcctgttcggaggaggaggaggactcacgcc
ttcggaggaggagaccatcagagctgcctgagaccgatacctgaggacgacagtaacgag
tgcaacgactctgatggagacgctgactgcagggagacggactggctgaactgcaccgat
ggtaaaggctcctatcaggtgaatgggtggagcctgaaaaggcagcagtttgtggcactg
atgtggaaacgcttcctgtacgctcgccgctccaggaagggcttcttcgctcagattgtt
ctcccggccgtgttcgtctgcatcgctctcatcttcagcctcattgtgccgccttttgga
aagtatccccgcctggagctgcagccgtggatgtacgaggaccaggtcaccttcatcagc
gacgatgctcctggagacgccaacatgcagaagttactaaatgctctgatggaccctcct
ggtttcgggactcgctgcatggacggatactctattccagaggcgccctgtacaatgggt
gacgaggactggcacacccccaacgtcccagagagcgtccagcagctgttcagctccaga
aactggaccatggagaacccgtcccctgactgttactgcaccacaggcggcaagaagagg
atgctgccagactgtcctgaaggagccggaggtctccccccacctgagataaagatgagc
gccactgacactctgcagaacctgacaggcagaaacatctcagactacctggtgaagacg
tactctcagatcatcggaaagagcctgaagaacaaagtctgggtgaatgagttcaggtac
ggaggcttctcattgggcgccaggagcatgcaggtccttccaccagccaatgagatcgat
gacgccatcgagagagtccgaaacgtctttaagctgcagaagggagccgctgccgatcga
ttcctcgacaatctgtccggcttcatcaatggcctggacaccaaaaacaacgtgaagatc
tggttcaacaacaaaggttggcacagcgtggcggcgtttatcaacgtgatgagtaatggc
atcctgagagcaaacctgccgccgggcgaagaggccagcaggtacggcatcaacgccttc
aaccatccgctgaacctgaccaaagagcagctgtcccaggtcgccctggtaacgacctct
gtggacgtcctggtgtccatctgtgtaatctttgccatgtccttcgtccctgcgagcttt
gtggtcttcctcatccaggagcgagtcagtaaagccaaacacatgcagttcatcagcggc
gtccatccgctgctctactggctggccaacttcatgtgggacatgctaaactactttgtc
ccagcaatactcgtcatcctcatcttcatctgcttccaacaaaaagcctacgtgtcatcc
agcaaccttccagtgctcgctctgctgctgctgctctacgggtggtccatcacgccgctc
atgtaccccgcctccttcttctttaagatccccagcacggcgtacgtcgttctcaccagc
atcaacatcctgatcggcatcaacggcagcatctccactttcgtcatggagctgttcgga
gaccacgaaatcggcggcatcaatgacattctgaagaacgtcctcctgatcttccctcac
ttctgtctgggtcgaggactcatcgatatggtgaagaaccaggcgatggccgatgccctg
gagagattcggtgagaacaggttccgctctcctctagagtgggacatggtgggaaagaac
ctgctcgccatggctgtggagggtgtggtcttcttcatcatcaccctcctcatccagtac
cgtttctgcatcaagcccaggccagtcagtaaactcaccaaactgggaccactgggagag
gaagatgaggatgtggctcgagagagacaccggattgtccagggcctgggacagggggac
atcctggagctgcggcagctcaccaaggtgtttaagaggaagcagaagccggccgtggat
cgactgtgtgtcgggattccacctggagagtgtttcggtctgctcggagtgaacggagct
gggaaaacgaccacctttaagatgctgacaggagacaccatggtgaccagcggggaggcc
ttcctggctgggaagagcatcctcagggagatagacgaggtccatcagaacatgggctac
tgtcctcagttcgacgctatcaatgatctgctgacaggaagggaacacctggagctgtac
gccatcctcagaggcgtgcccgagaaggaagtctgtgacgtggcagagtggggcatcagg
aagttgagtctgctgaagtacgcagataaacgagcaggaagctacagcggaggaaacttg
aggaagctgtccacggccatctctctgatcggagcgccgcctgtcgttttcctggacgag
cccaccactggcatggaccccaaggcccgccgagccctctggaactgcatccacagcgtc
atcaaggagggacgctcagtcgtcctcacctcccacagtatggaggagtgtgaggctctg
tgcaccaggatggccatcatggtgaacggcaggttcagatgtctcggcagcgtccagcac
ctgaagaacaggtttggtgacgggtacaccatcatcctgcgggtggcgggacccaacccg
gacctgctgcccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggag
aaacaccgcaacatgctgcagtaccagctgccgtcgtcgctcacttcgctcgcacacatc
ttctccatcctcgccaagaacaaggacacgctcaggatcgaggactactctgtcactcag
accacactggaccaggtgtttgtgaattttgcgaaggaccaaagtgacgactacgtttcc
aaagacgcatcagtgaggcggaaagacgtcgccatcaacattgcagcattaagccccgcc
cacggagccgctgagggagggggcgagcagcgggagagcgtcatgtga
DBGET
integrated database retrieval system
