Kryptolebias marmoratus (mangrove rivulus): 108249647
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Entry
108249647 CDS
T05608
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108249647 (upf2)
03015 mRNA surveillance pathway
108249647 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108249647 (upf2)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108249647 (upf2)
mRNA cycle factors
P-body specific factors
108249647 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
108249647
NCBI-ProteinID:
XP_017294644
LinkDB
All DBs
Position
LG18:19175595..19200657
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AA seq
1268 aa
AA seq
DB search
MDEKDVCPFGNKDKEKDRDADRRPGSARDRAKDDAKASGKKDGSKEEKRKRLEEEKKKKE
EKERRKKEEEKQKVELEQKKKEEEEKRQQEEQEKKLQEEEAKRQREEEAALLKEKEEGHQ
LHQEAWERHHSRKELRSKNQNAHESRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDAL
SNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKKHFE
ARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIISTDRETHTHVSVVI
SFCKHCGDDIAGLVPRKVKLAAEKFGLTFPPSEIISAEKQQPFQNLLREYFTSLTKHLKK
DHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANSQTLADLLDENMPELPQ
DKTVQEEHGPGIDIFTPGKPGDYELEGGIWEDEDARNFYENLVDLKAFIPAILFKDNEKS
SQSKDKDESKDGREGKDGASATEELELELEALDITDEPLELEGADEVENEELAKKLLDEQ
EQEDEEATTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTV
PRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIG
ELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQM
MRKKQAQHLDARYVTMVENAYYYCNPPPMEKAVKKKRPPLQEYIRKLLYKDLSKVTTEKV
LRQMRKLPWQEPEAKSYLICCMINIWNVKYNSIHCMANLLAGLVAYQEDVGIHVVDGVLE
DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNQDGSPSPLD
PPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLVYFQRYIWWKKSLDVWTKDHPFPID
IDYMISDTLELLRPKMRLSCSLDEATKQVSDLEREVLVKLGMAMEKDGRSSAMSEREALD
EDDDDGDDEEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLTDSNKEN
ETDEENNEVTIRGGGLKHVACPEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLHL
KSQLKKGGSGQQCVVEADSDDSNTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQA
EQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQHPKGAPNADLI
FKTGGRRR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaaagacgtttgcccctttggtaacaaagacaaggagaaggacagggatgcc
gacaggaggcccgggtccgcccgggacagagccaaagacgacgccaaagcgagcgggaag
aaggacggcagcaaggaggagaagaggaagcgcctagaggaggagaagaagaagaaggag
gagaaggagcgacggaagaaggaggaggagaaacagaaagtggagctggagcagaagaag
aaggaggaggaggagaagaggcagcaggaggagcaggagaagaagctccaagaggaggag
gccaaacggcagcgtgaggaggaggcggctctcctcaaagaaaaggaggagggccaccag
ctgcaccaggaggcctgggagcgccatcactccaggaaggagctgcgcagcaagaaccag
aacgcccacgagagtcggcccgaggaggccttcttcagccggctggactccagcctgaag
aagaacaccgccttcgtgaagaagctccgcacgctcaccgagcagcagcgagacgcgctc
tccaacgacttcgcctccctcaacctcagcaagtacatcggcgaggccgtgagctccgtg
gtggaggccaagctgaagatctccgacgtgggctgtgccgtccacctgtgctccctcttc
caccagcgctatgccgagttcgccccgctgctgctgcaggcgtggaagaaacacttcgag
gcgaggaaggaggacaaggcgcccaacgtcagcaagctgcgcacggacctgcgcttcatc
gccgagctgaccatcgtgggcctcttcaccgacaaagaaggcctgtcgctcatctacgag
cagctgaagaacatcatcagcacggaccgggagactcacactcacgtgtcggtggtgatc
agcttctgcaaacactgcggcgacgacatcgccggcctggtgccccgaaaggtgaagctg
gcagccgagaagttcggcctgaccttccctccgagcgaaatcatcagcgccgagaagcag
cagccgttccagaacctcctgcgggagtacttcacgtccctcaccaagcacctgaagaag
gaccaccgggagctgcagaacatcgagaggcagaaccggcgcatcctgcattccaaaggc
gagctgagtgaagacagacacaagcagtatgaagagtttgccacttcgtaccagaagctg
ctggccaacagtcagacgctggccgacctgctggatgagaacatgccggagctgccgcag
gacaagaccgtgcaggaagagcacggccccggcatcgacattttcacccccggcaaacct
ggggactacgaactcgaggggggcatctgggaggacgaagacgctcggaacttctacgag
aacctggtggacctgaaggccttcattcccgccatcctcttcaaggacaacgagaagagc
agccagagcaaagacaaggacgagtccaaagacggcagggagggaaaggacggcgcgagc
gccacggaggagctggagctggagctggaagctctcgacatcacagacgagcctctggaa
ctggaaggagcagacgaggtggagaacgaagaactggccaaaaagctgctcgacgaacag
gaacaagaagatgaggaggcgaccacggggtcccacctgaagctgatcgtggacgccttc
atccagcagctccccaactgcgtcaaccgagacctgatagacaaggccgccatggacttc
tgcatgaacatgaacaccaagtccaaccggaggaagctggtccgagccctgttcaccgtc
cccaggcagaggttggacctgctgccgttttacgcccgcctggtggcgacgctgcatccc
tgcatgtcggatgtggccgaggacctgtgctccatgctgaagggagacttccgctttcac
atccggaagaaggaccagatcaacatcgagacgaagaacaaaacggttcgtttcatcgga
gaactggccaagttcaagatgttctccaagacggacacgctgcactgcctgaagatgctg
ctgtccgacttcacccaccaccacatcgagatggcgtgcacgctgctggagacgtgcggc
cgcttcctgttccgctcgccggactcccacctgcgtacgagcgtcctgctggaacaaatg
atgcgtaagaagcaggcgcagcatctggacgctcgctacgtgaccatggtggagaacgcc
tactactactgcaacccaccgcccatggagaaggcggtgaagaagaagaggccgccgctg
caggagtacatccgcaagctgctctacaaggacctgtccaaggtgaccacggagaaggtg
ctgaggcagatgcgcaagctgccgtggcaggagcccgaggcgaagagctacctgatctgc
tgcatgatcaacatctggaacgtcaagtacaacagcatccactgcatggccaacctgctg
gccggcctggtggcctaccaggaggacgtggggatccacgtggtggacggggtgctggag
gacatccggctcggcatggaggtcaatcagccgaagttcaaccagcggcggatcagcagc
gccaagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcatcttccgc
accctgttctccttcatctccttcggggtgaaccaggacggcagccccagccccctggac
cccccggagcacctgttccggatccggctggtctgcaccctgctggacacctgcgggcag
tacttcgaccgcggctccagcaagaagaagctcgactgcttcctcgtctacttccagcgg
tacatctggtggaaaaagagcctggacgtttggaccaaggaccacccgttccccatcgac
atcgactacatgatcagcgacaccctggagctgctccggcccaagatgaggctgagctgc
tcgctggacgaggccaccaagcaggtgtccgacctggagagggaggtgctcgtcaaactg
ggcatggccatggagaaggatggccgctccagcgccatgagcgagagggaggccctggac
gaggatgatgacgatggcgacgacgaggaagagggcggcgccgaaaccgaggagcagtcg
ggcaacgagagcgaaatgaacgagcaggaagaggatgaaggctcggagaacgaggaggag
gagcgggaggaagaggaggaggagaacaccgactacctgaccgactccaacaaagaaaac
gagacggacgaggagaacaacgaggtcaccatccgtggcggcgggctgaagcacgtggcg
tgtcccgaggacgaagacttcatccaggctctggataagatgatgctggagaacctgcag
cagcggagcggcgaggcggtgaaggtgcaccagctggatgtggccatccccctacacctg
aagagtcagctgaagaagggcgggtccggacagcagtgcgtggtggaggcagactctgac
gactccaacaccatgcagttcgtcatgctgacccgcaagggcaacaagcagcagtataag
atcctgaacgttccgctgtcgtcccacctggcggcgaatcacttcaaccagcagcaggcg
gagcaggaggagcggatgaggatgaagaagctgaccctggacatcaacgagaggcaggag
caggaggactaccaggagatgatgcagtcgttggctcagcgtccggctcaggccaacacc
aaccgcgagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctgatc
ttcaaaaccgggggaaggagacgctga
DBGET
integrated database retrieval system
