Entry |
|
Symbol |
upf2
|
Name |
(RefSeq) regulator of nonsense transcripts 2 isoform X1
|
KO |
K14327 | regulator of nonsense transcripts 2 |
|
Organism |
kmr Kryptolebias marmoratus (mangrove rivulus)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:kmr00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108249647 (upf2)
03015 mRNA surveillance pathway
108249647 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:kmr03019]
108249647 (upf2)
Messenger RNA biogenesis [BR:kmr03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108249647 (upf2)
mRNA cycle factors
P-body specific factors
108249647 (upf2)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
LG18:19175595..19200657
|
AA seq |
1268 aa
MDEKDVCPFGNKDKEKDRDADRRPGSARDRAKDDAKASGKKDGSKEEKRKRLEEEKKKKE
EKERRKKEEEKQKVELEQKKKEEEEKRQQEEQEKKLQEEEAKRQREEEAALLKEKEEGHQ
LHQEAWERHHSRKELRSKNQNAHESRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDAL
SNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKKHFE
ARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIISTDRETHTHVSVVI
SFCKHCGDDIAGLVPRKVKLAAEKFGLTFPPSEIISAEKQQPFQNLLREYFTSLTKHLKK
DHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANSQTLADLLDENMPELPQ
DKTVQEEHGPGIDIFTPGKPGDYELEGGIWEDEDARNFYENLVDLKAFIPAILFKDNEKS
SQSKDKDESKDGREGKDGASATEELELELEALDITDEPLELEGADEVENEELAKKLLDEQ
EQEDEEATTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTV
PRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIG
ELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQM
MRKKQAQHLDARYVTMVENAYYYCNPPPMEKAVKKKRPPLQEYIRKLLYKDLSKVTTEKV
LRQMRKLPWQEPEAKSYLICCMINIWNVKYNSIHCMANLLAGLVAYQEDVGIHVVDGVLE
DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNQDGSPSPLD
PPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLVYFQRYIWWKKSLDVWTKDHPFPID
IDYMISDTLELLRPKMRLSCSLDEATKQVSDLEREVLVKLGMAMEKDGRSSAMSEREALD
EDDDDGDDEEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLTDSNKEN
ETDEENNEVTIRGGGLKHVACPEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLHL
KSQLKKGGSGQQCVVEADSDDSNTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQA
EQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQHPKGAPNADLI
FKTGGRRR |
NT seq |
3807 nt +upstreamnt +downstreamnt
atggacgagaaagacgtttgcccctttggtaacaaagacaaggagaaggacagggatgcc
gacaggaggcccgggtccgcccgggacagagccaaagacgacgccaaagcgagcgggaag
aaggacggcagcaaggaggagaagaggaagcgcctagaggaggagaagaagaagaaggag
gagaaggagcgacggaagaaggaggaggagaaacagaaagtggagctggagcagaagaag
aaggaggaggaggagaagaggcagcaggaggagcaggagaagaagctccaagaggaggag
gccaaacggcagcgtgaggaggaggcggctctcctcaaagaaaaggaggagggccaccag
ctgcaccaggaggcctgggagcgccatcactccaggaaggagctgcgcagcaagaaccag
aacgcccacgagagtcggcccgaggaggccttcttcagccggctggactccagcctgaag
aagaacaccgccttcgtgaagaagctccgcacgctcaccgagcagcagcgagacgcgctc
tccaacgacttcgcctccctcaacctcagcaagtacatcggcgaggccgtgagctccgtg
gtggaggccaagctgaagatctccgacgtgggctgtgccgtccacctgtgctccctcttc
caccagcgctatgccgagttcgccccgctgctgctgcaggcgtggaagaaacacttcgag
gcgaggaaggaggacaaggcgcccaacgtcagcaagctgcgcacggacctgcgcttcatc
gccgagctgaccatcgtgggcctcttcaccgacaaagaaggcctgtcgctcatctacgag
cagctgaagaacatcatcagcacggaccgggagactcacactcacgtgtcggtggtgatc
agcttctgcaaacactgcggcgacgacatcgccggcctggtgccccgaaaggtgaagctg
gcagccgagaagttcggcctgaccttccctccgagcgaaatcatcagcgccgagaagcag
cagccgttccagaacctcctgcgggagtacttcacgtccctcaccaagcacctgaagaag
gaccaccgggagctgcagaacatcgagaggcagaaccggcgcatcctgcattccaaaggc
gagctgagtgaagacagacacaagcagtatgaagagtttgccacttcgtaccagaagctg
ctggccaacagtcagacgctggccgacctgctggatgagaacatgccggagctgccgcag
gacaagaccgtgcaggaagagcacggccccggcatcgacattttcacccccggcaaacct
ggggactacgaactcgaggggggcatctgggaggacgaagacgctcggaacttctacgag
aacctggtggacctgaaggccttcattcccgccatcctcttcaaggacaacgagaagagc
agccagagcaaagacaaggacgagtccaaagacggcagggagggaaaggacggcgcgagc
gccacggaggagctggagctggagctggaagctctcgacatcacagacgagcctctggaa
ctggaaggagcagacgaggtggagaacgaagaactggccaaaaagctgctcgacgaacag
gaacaagaagatgaggaggcgaccacggggtcccacctgaagctgatcgtggacgccttc
atccagcagctccccaactgcgtcaaccgagacctgatagacaaggccgccatggacttc
tgcatgaacatgaacaccaagtccaaccggaggaagctggtccgagccctgttcaccgtc
cccaggcagaggttggacctgctgccgttttacgcccgcctggtggcgacgctgcatccc
tgcatgtcggatgtggccgaggacctgtgctccatgctgaagggagacttccgctttcac
atccggaagaaggaccagatcaacatcgagacgaagaacaaaacggttcgtttcatcgga
gaactggccaagttcaagatgttctccaagacggacacgctgcactgcctgaagatgctg
ctgtccgacttcacccaccaccacatcgagatggcgtgcacgctgctggagacgtgcggc
cgcttcctgttccgctcgccggactcccacctgcgtacgagcgtcctgctggaacaaatg
atgcgtaagaagcaggcgcagcatctggacgctcgctacgtgaccatggtggagaacgcc
tactactactgcaacccaccgcccatggagaaggcggtgaagaagaagaggccgccgctg
caggagtacatccgcaagctgctctacaaggacctgtccaaggtgaccacggagaaggtg
ctgaggcagatgcgcaagctgccgtggcaggagcccgaggcgaagagctacctgatctgc
tgcatgatcaacatctggaacgtcaagtacaacagcatccactgcatggccaacctgctg
gccggcctggtggcctaccaggaggacgtggggatccacgtggtggacggggtgctggag
gacatccggctcggcatggaggtcaatcagccgaagttcaaccagcggcggatcagcagc
gccaagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcatcttccgc
accctgttctccttcatctccttcggggtgaaccaggacggcagccccagccccctggac
cccccggagcacctgttccggatccggctggtctgcaccctgctggacacctgcgggcag
tacttcgaccgcggctccagcaagaagaagctcgactgcttcctcgtctacttccagcgg
tacatctggtggaaaaagagcctggacgtttggaccaaggaccacccgttccccatcgac
atcgactacatgatcagcgacaccctggagctgctccggcccaagatgaggctgagctgc
tcgctggacgaggccaccaagcaggtgtccgacctggagagggaggtgctcgtcaaactg
ggcatggccatggagaaggatggccgctccagcgccatgagcgagagggaggccctggac
gaggatgatgacgatggcgacgacgaggaagagggcggcgccgaaaccgaggagcagtcg
ggcaacgagagcgaaatgaacgagcaggaagaggatgaaggctcggagaacgaggaggag
gagcgggaggaagaggaggaggagaacaccgactacctgaccgactccaacaaagaaaac
gagacggacgaggagaacaacgaggtcaccatccgtggcggcgggctgaagcacgtggcg
tgtcccgaggacgaagacttcatccaggctctggataagatgatgctggagaacctgcag
cagcggagcggcgaggcggtgaaggtgcaccagctggatgtggccatccccctacacctg
aagagtcagctgaagaagggcgggtccggacagcagtgcgtggtggaggcagactctgac
gactccaacaccatgcagttcgtcatgctgacccgcaagggcaacaagcagcagtataag
atcctgaacgttccgctgtcgtcccacctggcggcgaatcacttcaaccagcagcaggcg
gagcaggaggagcggatgaggatgaagaagctgaccctggacatcaacgagaggcaggag
caggaggactaccaggagatgatgcagtcgttggctcagcgtccggctcaggccaacacc
aaccgcgagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctgatc
ttcaaaaccgggggaaggagacgctga |