KEGG   Kryptolebias marmoratus (mangrove rivulus): 108249647
Entry
108249647         CDS       T05608                                 
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013  Nucleocytoplasmic transport
kmr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108249647 (upf2)
   03015 mRNA surveillance pathway
    108249647 (upf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kmr03019]
    108249647 (upf2)
Messenger RNA biogenesis [BR:kmr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     108249647 (upf2)
   mRNA cycle factors
    P-body specific factors
     108249647 (upf2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 108249647
NCBI-ProteinID: XP_017294644
LinkDB
Position
LG18:19175595..19200657
AA seq 1268 aa
MDEKDVCPFGNKDKEKDRDADRRPGSARDRAKDDAKASGKKDGSKEEKRKRLEEEKKKKE
EKERRKKEEEKQKVELEQKKKEEEEKRQQEEQEKKLQEEEAKRQREEEAALLKEKEEGHQ
LHQEAWERHHSRKELRSKNQNAHESRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDAL
SNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKKHFE
ARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIISTDRETHTHVSVVI
SFCKHCGDDIAGLVPRKVKLAAEKFGLTFPPSEIISAEKQQPFQNLLREYFTSLTKHLKK
DHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANSQTLADLLDENMPELPQ
DKTVQEEHGPGIDIFTPGKPGDYELEGGIWEDEDARNFYENLVDLKAFIPAILFKDNEKS
SQSKDKDESKDGREGKDGASATEELELELEALDITDEPLELEGADEVENEELAKKLLDEQ
EQEDEEATTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTV
PRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIG
ELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQM
MRKKQAQHLDARYVTMVENAYYYCNPPPMEKAVKKKRPPLQEYIRKLLYKDLSKVTTEKV
LRQMRKLPWQEPEAKSYLICCMINIWNVKYNSIHCMANLLAGLVAYQEDVGIHVVDGVLE
DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNQDGSPSPLD
PPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLVYFQRYIWWKKSLDVWTKDHPFPID
IDYMISDTLELLRPKMRLSCSLDEATKQVSDLEREVLVKLGMAMEKDGRSSAMSEREALD
EDDDDGDDEEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLTDSNKEN
ETDEENNEVTIRGGGLKHVACPEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLHL
KSQLKKGGSGQQCVVEADSDDSNTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQA
EQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQHPKGAPNADLI
FKTGGRRR
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggacgagaaagacgtttgcccctttggtaacaaagacaaggagaaggacagggatgcc
gacaggaggcccgggtccgcccgggacagagccaaagacgacgccaaagcgagcgggaag
aaggacggcagcaaggaggagaagaggaagcgcctagaggaggagaagaagaagaaggag
gagaaggagcgacggaagaaggaggaggagaaacagaaagtggagctggagcagaagaag
aaggaggaggaggagaagaggcagcaggaggagcaggagaagaagctccaagaggaggag
gccaaacggcagcgtgaggaggaggcggctctcctcaaagaaaaggaggagggccaccag
ctgcaccaggaggcctgggagcgccatcactccaggaaggagctgcgcagcaagaaccag
aacgcccacgagagtcggcccgaggaggccttcttcagccggctggactccagcctgaag
aagaacaccgccttcgtgaagaagctccgcacgctcaccgagcagcagcgagacgcgctc
tccaacgacttcgcctccctcaacctcagcaagtacatcggcgaggccgtgagctccgtg
gtggaggccaagctgaagatctccgacgtgggctgtgccgtccacctgtgctccctcttc
caccagcgctatgccgagttcgccccgctgctgctgcaggcgtggaagaaacacttcgag
gcgaggaaggaggacaaggcgcccaacgtcagcaagctgcgcacggacctgcgcttcatc
gccgagctgaccatcgtgggcctcttcaccgacaaagaaggcctgtcgctcatctacgag
cagctgaagaacatcatcagcacggaccgggagactcacactcacgtgtcggtggtgatc
agcttctgcaaacactgcggcgacgacatcgccggcctggtgccccgaaaggtgaagctg
gcagccgagaagttcggcctgaccttccctccgagcgaaatcatcagcgccgagaagcag
cagccgttccagaacctcctgcgggagtacttcacgtccctcaccaagcacctgaagaag
gaccaccgggagctgcagaacatcgagaggcagaaccggcgcatcctgcattccaaaggc
gagctgagtgaagacagacacaagcagtatgaagagtttgccacttcgtaccagaagctg
ctggccaacagtcagacgctggccgacctgctggatgagaacatgccggagctgccgcag
gacaagaccgtgcaggaagagcacggccccggcatcgacattttcacccccggcaaacct
ggggactacgaactcgaggggggcatctgggaggacgaagacgctcggaacttctacgag
aacctggtggacctgaaggccttcattcccgccatcctcttcaaggacaacgagaagagc
agccagagcaaagacaaggacgagtccaaagacggcagggagggaaaggacggcgcgagc
gccacggaggagctggagctggagctggaagctctcgacatcacagacgagcctctggaa
ctggaaggagcagacgaggtggagaacgaagaactggccaaaaagctgctcgacgaacag
gaacaagaagatgaggaggcgaccacggggtcccacctgaagctgatcgtggacgccttc
atccagcagctccccaactgcgtcaaccgagacctgatagacaaggccgccatggacttc
tgcatgaacatgaacaccaagtccaaccggaggaagctggtccgagccctgttcaccgtc
cccaggcagaggttggacctgctgccgttttacgcccgcctggtggcgacgctgcatccc
tgcatgtcggatgtggccgaggacctgtgctccatgctgaagggagacttccgctttcac
atccggaagaaggaccagatcaacatcgagacgaagaacaaaacggttcgtttcatcgga
gaactggccaagttcaagatgttctccaagacggacacgctgcactgcctgaagatgctg
ctgtccgacttcacccaccaccacatcgagatggcgtgcacgctgctggagacgtgcggc
cgcttcctgttccgctcgccggactcccacctgcgtacgagcgtcctgctggaacaaatg
atgcgtaagaagcaggcgcagcatctggacgctcgctacgtgaccatggtggagaacgcc
tactactactgcaacccaccgcccatggagaaggcggtgaagaagaagaggccgccgctg
caggagtacatccgcaagctgctctacaaggacctgtccaaggtgaccacggagaaggtg
ctgaggcagatgcgcaagctgccgtggcaggagcccgaggcgaagagctacctgatctgc
tgcatgatcaacatctggaacgtcaagtacaacagcatccactgcatggccaacctgctg
gccggcctggtggcctaccaggaggacgtggggatccacgtggtggacggggtgctggag
gacatccggctcggcatggaggtcaatcagccgaagttcaaccagcggcggatcagcagc
gccaagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcatcttccgc
accctgttctccttcatctccttcggggtgaaccaggacggcagccccagccccctggac
cccccggagcacctgttccggatccggctggtctgcaccctgctggacacctgcgggcag
tacttcgaccgcggctccagcaagaagaagctcgactgcttcctcgtctacttccagcgg
tacatctggtggaaaaagagcctggacgtttggaccaaggaccacccgttccccatcgac
atcgactacatgatcagcgacaccctggagctgctccggcccaagatgaggctgagctgc
tcgctggacgaggccaccaagcaggtgtccgacctggagagggaggtgctcgtcaaactg
ggcatggccatggagaaggatggccgctccagcgccatgagcgagagggaggccctggac
gaggatgatgacgatggcgacgacgaggaagagggcggcgccgaaaccgaggagcagtcg
ggcaacgagagcgaaatgaacgagcaggaagaggatgaaggctcggagaacgaggaggag
gagcgggaggaagaggaggaggagaacaccgactacctgaccgactccaacaaagaaaac
gagacggacgaggagaacaacgaggtcaccatccgtggcggcgggctgaagcacgtggcg
tgtcccgaggacgaagacttcatccaggctctggataagatgatgctggagaacctgcag
cagcggagcggcgaggcggtgaaggtgcaccagctggatgtggccatccccctacacctg
aagagtcagctgaagaagggcgggtccggacagcagtgcgtggtggaggcagactctgac
gactccaacaccatgcagttcgtcatgctgacccgcaagggcaacaagcagcagtataag
atcctgaacgttccgctgtcgtcccacctggcggcgaatcacttcaaccagcagcaggcg
gagcaggaggagcggatgaggatgaagaagctgaccctggacatcaacgagaggcaggag
caggaggactaccaggagatgatgcagtcgttggctcagcgtccggctcaggccaacacc
aaccgcgagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctgatc
ttcaaaaccgggggaaggagacgctga

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