Kryptolebias marmoratus (mangrove rivulus): 108249859
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Entry
108249859 CDS
T05608
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108249859 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108249859 (dhx16)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108249859 (dhx16)
Spliceosome [BR:
kmr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108249859 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
108249859 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
PWI
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108249859
NCBI-ProteinID:
XP_024858111
UniProt:
A0A3Q3A8V0
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All DBs
Position
LG16:786702..806388
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AA seq
1053 aa
AA seq
DB search
MAGLEQWVSDRLHDILGLSDRYVSQFMIGIARKASSPEDFVGRLEQTGTIDVDQNVTAFA
KELFEKIPRQPVAEKLSRAMEREAIEMDRKNRTYTLLEDSDSGEEAVREKKKGKKKSKDK
ERGDKKKHIRQKKVSESSSEEETTRRGSGQEAQKSVKKEDEEEEEWEKEERERLQDIEER
DAFAQRVRQKDKEKTRNITERTDKKAYEEAQKRLKMAEDDQRNMLPELRKRSRWDYLKKR
EAEKLEDLEAEIVDDEYLFSPDELTEREKKDLEYKRTLRDLAKDYKKAGAKEQEERKNRY
YMPEENRRKEVPQKDLELEETPMELGGEQGRWEEERLKTASLSFGARKERELGMKEEQER
YQLIMEEDEMIDFVSTAITMKGTRSEQDREEPALSQAELKKHSIQEVRRSLPIFPYREDL
LAAIHEHQVLVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVAARVAEE
MSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLDACVVSVLQIHVTQPPGDVLVFLTGQEEIEACCEMLQERCRRLGSKIAELLVLPIY
ANLPSDMQAKIFTPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQW
VESGFSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVLSCQEDNVPIRKAVTAGYF
YHTGRLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWL
LEVAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccggtctggagcagtgggtgagcgaccgtctgcatgacatcctcgggttgagcgac
agatacgtctctcagttcatgatcgggatcgctcggaaagcgtcgagtcccgaggacttc
gtgggccgtctggagcagacggggacgatcgacgtggatcagaatgtgacggccttcgcc
aaagagctcttcgaaaagattcctcgccagccggttgcggagaagctgtccagagcgatg
gaacgtgaggcgatagagatggacaggaagaaccggacgtacacgttactggaggacagc
gacagcggcgaggaggcggtgagagaaaagaagaaaggaaagaagaaaagcaaagacaaa
gagcgaggagacaagaagaaacacatccgacagaagaaggtcagcgagtcttcaagtgag
gaggaaacgaccagaaggggttctggccaagaagcccagaagtctgtgaagaaggaagat
gaggaggaggaagagtgggagaaggaggagagggaacgactgcaggacatcgaggagaga
gacgccttcgctcagagagtgagacagaaagacaaagaaaagacccgaaacatcacagag
cggacggacaaaaaggcttatgaagaagctcagaaaaggctgaagatggctgaagacgat
cagaggaacatgctgccggagctgaggaaacgttctcgctgggattatctgaagaagaga
gaggccgagaagctggaagacctggaggcggagatcgtagacgacgagtaccttttctcc
ccggatgagctgacggagagggagaagaaggacctggaatacaaacgaaccctcagagat
ctggctaaagattacaaaaaggctggagccaaggagcaggaggagaggaagaacagatac
tacatgcctgaagaaaacaggaggaaggaggttcctcagaaggacctggagctggaggag
accccgatggagctggggggggagcagggccgctgggaggaggagaggctgaagacggcc
tcgctcagcttcggagccaggaaggagcgcgagctgggcatgaaggaggagcaggagagg
taccagctgatcatggaggaggacgaaatgatcgacttcgtcagcacggccatcaccatg
aaggggactcgctcggagcaggatcgggaggagccggctctttcccaggccgagctgaag
aaacactccatacaggaggtccgacgcagcctccccatcttcccctacagagaagacctg
ctggctgccatccacgagcaccaggtcctggtcatcgagggggagaccggctcaggaaag
accacccagatccctcagtacctcctggaagacggctacactaaaggagggatgaagatc
ggctgcacgcagcctcgcagagtggcggccatgtctgtggcggcccgagtggctgaggag
atgagcgtgaagctcggtaacgaggtggggtacagcattcggttcgaggactgcacgtca
gagagaaccgtgctgaagtacatgacggacggcatgctgctccgagagttcctcacagaa
ccggacctggccagctacagcgtggtcatcatcgatgaagctcatgagcgcacgctccac
acagacatcctgttcggcctcattaaagacatcgccaggttccgcccggacctgaaggtt
ctggtggcgagcgccacgttggacacagagcggttctcctgcttcttcgacgacgctcct
gtgttcaggatcccaggcaggaggttccctgtggatatcttctacaccaaggctcctgag
gcggactacctggatgcctgtgtggtgtcggtgctgcagattcacgtcacgcagcctcca
ggagacgtcctggtcttcctcactggacaggaggagatcgaagcgtgctgcgagatgctg
caggagagatgccggcggctcggctccaagatcgcagagctgctcgtcctccccatctat
gccaacctgccgtccgacatgcaggccaaaatcttcacgccgacgcctcctggagcccgc
aaggtggtggtggccaccaacatcgcagaaacgtcgctgaccatcgacggcatcatctac
gtcatcgaccccggcttctgcaagcagaagagctacaacgcccggacggggatggagtcg
ctcatcgtcacgccgtgctcccgggcttcagccaatcagagagcgggccgagccggcagg
gtggctgctgggaaatgtttccgcctctacacggcgtgggccttcaagcacgagatggag
gaaaccacggttcctgagatccagaggaccaacctggggaacgtggtgctgctgctgaag
agtttaggcatcaacgacctgatccacttcgacttcatggaccctcctcctcatgagact
ctggtgctggctctggagcagctctacgctctgggagccctgaaccacctgggagagctc
accaagctgggtcgcaggatggccgagttacccgtagacccgatgctgagcaagatgatc
ctggcctctgaacagtacaagtgttcggaggaagtgctgaccatcgcagccatgctgtcc
gtgaacaactccatcttctaccggcccaaagacaaagtggtgcacgccgacaacgccagg
atgaactttgtggttccgggaggagaccacctggtgctgctcaacgtctacacgcagtgg
gtggagagcggcttctccacacagtggtgctacgagaacttcatccagttccgctccatg
aggagagcccgggacgtccgggaccagctggagggcctgatggaccgcatcgaggtggag
gtgctgagctgccaagaagacaacgtccccatccgcaaggcggtgacggcggggtatttc
taccacacggggaggctcagtaaaggcggctacaagacggtgaagcaccagcagacggtc
tacgtccacccgaacagctccctgttcgaggagcagccgcgctggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggtgatcgagatcgacagcagctggctg
ctggaagtggctcctcattactacaagagcaaagagctggaggacagcagcagcaagaag
atgccccggaagcagggcaaaacgaaggaggagctgggctga
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integrated database retrieval system
