KEGG   Kryptolebias marmoratus (mangrove rivulus): 108250132
Entry
108250132         CDS       T05608                                 
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
  KO
K16547  protein NEDD1
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:kmr03036]
    108250132 (nedd1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:kmr04812]
    108250132 (nedd1)
Chromosome and associated proteins [BR:kmr03036]
 Eukaryotic type
  Centrosome formation proteins
   Pericentriolar materials (PCM)
    Other PCM proteins
     108250132 (nedd1)
   Microtubules and associated factors
    gamma-tubulin ring complex
     108250132 (nedd1)
Cytoskeleton proteins [BR:kmr04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Gamma-tubulin complex components
     108250132 (nedd1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st WD40 WD40_WDHD1_1st WDR55 Beta-prop_EML Beta-prop_NOL10_N Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 EIF3I Beta-prop_VPS8 WD40_Gbeta CFAP251_N WD40_RFWD3 Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd PAC11 Beta-prop_Aladin Beta-prop_IFT140_1st DSE1_N Beta-prop_ACSF4 Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_LRRK2 TRM82_WD ASA1 KNTC1_N SHKBP1_KCTD3_C Runt
Other DBs
NCBI-GeneID: 108250132
NCBI-ProteinID: XP_017295352
LinkDB
Position
LG11:26680011..26686032
AA seq 660 aa
MEEVTRLVSTGDCVKIWDAVTMAPLEQFNPHSISHPVAQACWSSNNQYLVSASSSGDKLV
VSSLKSSPVLVVELADGKKQTRVCLSSSSQFLVSGGLDHCVHIWDLKTKRLHRSLKDHKE
EVTCVSFNANDSCVASGSTSGDLVLHSLTTNLSSRAFGHGSNQPIHDLRLSSVKRSLLGS
VSDSGTVVLWDSNTQRELHVFDGAHKAPGSGLAFSPTSDLLVVSVGLDKKIVCYDTASKI
VLRSIRVDSPLTAVDFTMDGTGLVVGSTQGKIYQYDLRNTSTPTKTTVAHKTSVTCLRFQ
SNTSRHKSSKLGATKISSTKRSSSKLPSSHSDSAPSTGPAPHRQVTGTAGGAGVETVSRE
AEGQQGAGQGAEPVPAVGRNSLDIFSPTREGPDSGNQGRTGETLFGRTNVTSLETLSRED
GGQQLVGRGSLDIFSPVREDSGTGSQRKTPLGNQLGASAGRCYSSLSIFQSPPPIREEEP
ISAEACDSRKSDEASGYSLEGEAQTPPTTSQQTNQSQAAPPFFTPEPGLRRANGVQSQLS
YDSPVFGTPPPSAAASGPAAAAAVSSSLSQNIADVVGQGGSAPLTSLQIHFIQNMIHETL
EEFRTACHQDIINLQVEMIRQFYIQLTDIHGLIEKYSVNESLVEEIEKLREENRRLRANY
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggaggaggtgacacgcctggtgtccaccggagactgtgtgaagatctgggatgcggtt
accatggcgccgctggagcagtttaacccccacagcatcagtcaccccgtcgctcaggcc
tgctggagctccaacaatcagtacctggtgagcgccagcagcagcggggacaaactggtg
gtctccagtctgaagtccagcccggtgctggtggtggaactggctgacgggaaaaaacag
acccgtgtgtgtctgagctcctcgtctcagtttctggtcagtggaggtctggatcactgc
gtccacatctgggacctgaagaccaagaggctgcaccgctccctcaaagaccacaaagag
gaggtgacctgtgtgtcctttaacgccaatgacagctgcgtggcctcgggctccaccagc
ggggacctggtcctccacagtctgaccaccaacctgtccagcagggcgttcggccacggc
agcaaccagcccatccacgacctgcggctgtcctcggtgaagcgctccctgctgggcagc
gtctccgacagcggcaccgtggtcctgtgggactccaacacccagagggagctgcacgtg
ttcgacggcgcccacaaggccccgggctccggcctggccttctcccccaccagcgacctg
ctcgtcgtcagcgtcggcctcgacaagaagatcgtctgctacgacacggccagcaagata
gtcctgaggtccatccgtgtggacagtcctctgaccgcggtggacttcaccatggacgga
accggtctggtggtcggctccactcaggggaagatctaccagtacgacctgaggaacacc
agcacccccaccaagaccaccgtggcccacaaaacctccgtcacctgcctgcgtttccag
agcaacaccagccgacacaagtccagtaaactgggagccaccaagatctccagcaccaag
agatccagctccaaactgcccagcagccactcagactccgcccccagcacaggccccgcc
ccccacagacaggtgaccggcacagcaggaggcgccggcgtggagacggtgagccgcgag
gctgagggccaacagggggcggggcaaggggcggagcctgtccctgccgtggggcgaaac
agtctggacatcttctctccgactcgcgaaggtccagactcggggaaccaggggaggacc
ggagagaccctgtttggaagaacgaatgttaccagtttggagacgctgtccagagaggac
gggggtcagcagctggtgggtcggggcagtctggacatcttctccccggtccgagaagac
tcaggtaccggatcacagcgtaagacccccctgggaaaccagctgggggcgtctgcaggc
cgctgctacagctcgctgtccatcttccagtccccgccgcccatcagagaggaggagccg
atcagtgctgaagcatgtgactccagaaagtccgatgaggccagcggctacagtctggag
ggagaggctcagactccgcccaccacatcccaacaaaccaatcagagtcaggcggccccg
cccttcttcaccccggagccaggcctccgcagagcgaacggcgtccagtctcagctgagc
tacgactcacctgtcttcgggactccgccccccagcgcagcagcttcaggtccagctgcg
gcagccgccgtgtcctcttctctgtcccagaacatcgcagacgtggtcggacagggaggc
tccgccccgctgacatcgctgcagatccacttcatccagaacatgattcacgagactctg
gaggagttcaggaccgcgtgtcatcaggacatcatcaacctgcaggtggagatgatccga
cagttctacatccagctgacggatatccacggcctgatagagaaatattcagtcaacgag
tctctggtggaggagatcgagaagctgcgagaggagaaccggcgcctgcgagctaactac
tga

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