Kryptolebias marmoratus (mangrove rivulus): 108250140
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Entry
108250140 CDS
T05608
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108250140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108250140
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108250140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ_6
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108250140
NCBI-ProteinID:
XP_017295370
UniProt:
A0A3Q2ZCE0
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All DBs
Position
LG15:4513512..4541928
Genome browser
AA seq
1274 aa
AA seq
DB search
MEWRQQSSLSCADAFDEARRWIQEVTGKSFGCGDFRAALENGVLLCDLINQLKPGIIKRV
NRLSTPIAGLDNVNVFLKACGKLGLNESQLFHPGDLQDLSTRVTLRRDESQRRVKNVLVT
IYWLGRKAQLDPFYSGPQLNFKAFEGLLGLALSKALEEGSNVFVKDGGYKEYRSSEGELC
QDITQISVGGNLEDGFESLDTRALRPNEEACGSDAEAEQMFKMDNTRLSAHQNKGGIPPP
LRRKQGREGNAGASASPLPRTYEIQVRPERPVQVNPGWIWSKSLSDIPMVYPVRKVSNGN
TVYNKGQDTGLARGWSQESERKRSIAAKDSEAQWQDDLTKWKNRRRSTKSELYRKSQDRE
HVINQMANGTMTSYETYESQGGPIKRFSRDQSPWQHSAAPRPYSTSSPSKPSSSDLRPRS
RAPLAHSYATEEPKIHARGLPVGAMPTSAGSLFEEETYFASLASDRAGVTTPSLDHPFTS
QTQVKSFSSQSTSQSPPEQTQPQNILTNKVSSAVLENSNTFLSSNSSLTPASSISHEKPP
VVVDLKAEPFCPDPVHEAGGGTTEHLQDQIPKAQEERQGLDWDSAVGNRTQQAAGNSRYV
SRTVTWSRSASLPRGFRRSEGSSSISSAITARPFGTKQARMSSVPRLYSVDDNQGLLLNA
EKEDSLSASSKSSIKRQTAAANLRDQYQASVRQKKANQARQNGSEQRQEVRRFSLQSSSQ
ILPQPYPNLPSYHNKSPILSSKAPTDSSKVDHSDMRVSLTLKPNSVPDFGFQTYWDSTGL
KVKSIQPASPAEHCQLCVDDEIVAVDGVPVAHMTPNQWKDKMASSLQTGSLTMDIRRYGI
KDWSNSKESLPNQPGQSRMTLNLTSAAPVLIGYPDHHANGVAPADTKTSKSSWEKEHGAQ
DKSKDGVLPESFSTTRSKESNSVTMQNQKRREEFFNEKGGSESAISDLQVPSLSPSTFSW
SWDREEDRRRQEKWQEEQERLLQEQYQRDQERLEAEWRQAQQDAVEGRKLQENACEVSSG
PERFCSSLFYNNGLTKKTQEDKQRPDGENLKEVGIRHQNDAPGAQNDKMSEKNWAEGSSG
FARLSPAHRALSSSTPALSGPYKQSRGDPRRGLGRSVTKAERERQQILEEMKKRTQLLTD
NSWIRQRSNSFHKEPVDVGASIKRYESLDNLDTLSSNMAAAFSYPRPHSAAGGYVVPSRN
AASRYSTGSMSLQRNAYTDSSHYASVWAAADISEEQRLESRSVSETGSPIVSAVISNSSP
LVPCDQHDVLQIEE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagagcagcctcagctgtgcggacgccttcgacgaggctcggcgc
tggattcaggaagtgacaggaaaatcctttggttgcggcgacttccgtgcagccttggag
aatggagtcctgctctgcgacctaatcaaccagttgaaacctggcatcatcaagcgggtg
aacaggctctccacccccatcgctggcctggataatgtgaatgttttcctgaaagcttgt
ggaaaactcggcctaaatgagtctcagctgtttcatccaggcgaccttcaggacctgtcc
actcgagtgacgctcaggcgtgatgaaagtcagagaagagtcaaaaatgttcttgtcacc
atatactggctgggtcgtaaggctcaactggacccattttacagtggaccgcagcttaat
ttcaaggcttttgaggggctgttgggtttagctttgtcgaaggctctagaagaaggaagt
aatgtgtttgtgaaagatggaggatataaagagtaccgctcctcagagggagagttatgt
caggatataacacagatttctgttggaggaaacttggaggacggcttcgagtctctggac
acccgagctctccgcccaaatgaagaagcttgtggaagcgacgctgaagctgagcagatg
ttcaagatggacaatacgaggctctcagcccaccaaaacaaaggcggcatcccaccaccg
cttcgccgaaaacaaggacgggaggggaatgcaggggcctctgcgagtccgctccccaga
acatatgaaatccaggttagacctgagaggccggttcaggtcaaccctggctggatttgg
agcaaatccctcagcgacatcccaatggtgtaccctgtgcgtaaagtttcaaatggaaac
acggtttataataaaggacaggacaccggcctggcgaggggttggagccaagaaagtgaa
agaaagcggagtattgctgccaaggacagtgaagctcagtggcaggatgacttgacaaag
tggaagaatcgccgcaggagcaccaagtctgaactctacaggaagtcccaggacagggag
catgtcattaatcagatggccaacgggaccatgacaagctatgagacgtatgaatcacag
ggtggtcccataaagagattctccagagaccagtcgccatggcagcacagcgctgctccc
cgtccttactccacctcttctccatcaaaaccctcgagttctgatctcagacctcgttct
cgagctccgctggcccacagctacgccactgaggagcccaaaatccatgctcggggattg
ccagtgggagccatgccaacctctgcagggagcctctttgaagaagagacatattttgca
tctttagcttcagacagagcaggagttaccacaccttctttggatcaccctttcacctcc
cagacccaagtcaagtccttcagcagccagtctacttcccagtctccacctgaacagacc
cagcctcaaaacatcttaacaaataaagtctcttctgctgttctggaaaattcaaacaca
tttctgtcctcaaacagcagcctgactcctgcctcatccataagtcatgaaaaacctccg
gtcgtcgtcgatttgaaagcggaacctttttgtccagatccagttcatgaagcaggaggt
ggtaccactgagcatttgcaggatcagatcccgaaagctcaagaagaacgacagggcttg
gattgggattcagcggtgggtaacagaacccagcaggctgcagggaactccagatacgtg
tctagaaccgtgacgtggtccaggtcagccagccttccccgtggtttccgtcggtctgag
ggttcctccagcatctcctctgcaatcacagccagacccttcgggaccaagcaggccagg
atgtcctccgtaccgagactctacagcgttgatgacaatcagggtttgctgttgaacgct
gagaaagaggattctctttctgcatcctccaaatcatcaatcaaaaggcagaccgcagct
gccaatctgagggatcagtaccaggcgtcggtccggcagaaaaaagccaaccaagccagg
cagaacggctcggaacagagacaggaagtccgcaggttctcccttcagtccagcagccag
atcctacctcaaccttacccaaacctgccgtcctaccacaataaaagcccgattctctca
tctaaagcgccaaccgactcctcaaaggttgatcatagtgacatgagagtgagcctgact
cttaaacccaacagtgtaccagacttcggttttcaaacttactgggactccacaggcttg
aaagtaaaatccatccaacctgctagtccagcagagcattgccagctgtgtgtggacgat
gagatcgtggcagtcgatggcgttccagtggcacacatgacccccaaccagtggaaggat
aaaatggcatcttccctgcaaactggcagcctgaccatggacattcgacgttatggtatc
aaggattggagcaacagtaaggaaagtcttcccaaccagcctggacagagcaggatgacc
ctcaatttgacgtctgcagcgcccgttctgataggctaccctgatcatcatgccaacggt
gtggctcctgcagacacaaaaacatctaaatccagctgggagaaagaacatggagcacaa
gataaaagcaaggatggggtccttcctgagagcttcagtacaaccaggagtaaagaatct
aatagtgttactatgcaaaatcagaaaaggagagaagaatttttcaatgagaaaggaggc
tcagaatctgccatatcagatctccaggtgccctccctgagcccatccaccttcagctgg
tcgtgggaccgcgaggaggatcgcaggcgccaggagaagtggcaggaagaacaggagcgc
ctcctacaggagcagtaccagagggatcaggagaggctggaggcggagtggcgacaggca
caacaggatgcagtggaaggcaggaagctgcaggagaatgcatgtgaggtaagcagtggt
cctgagaggttctgcagctctctgttttataataatggactgacgaagaaaacccaagaa
gacaagcagagacctgatggagaaaatctgaaagaagtggggataagacatcagaatgat
gcccccggagcacagaatgacaagatgtctgaaaagaattgggccgagggctcctctggt
ttcgctcggctgtcccctgcacacagggcactgtcctcatctaccccagctttatctgga
ccctacaagcaaagcagaggcgatccgaggagaggactagggcgatccgtgactaaagct
gaacgagagaggcagcagattttggaggagatgaaaaaaaggactcagctcctgaccgac
aacagctggatacgtcagcgcagcaacagtttccacaaggagcccgttgatgtcggtgct
tccatcaagagatacgagtccctggataacctggacacattgtcctccaacatggctgca
gctttttcttaccctcgccctcattcggctgccggaggttacgttgtcccaagcagaaac
gctgcttcccgctatagcactggatcgatgtcattgcagagaaatgcatacacagattcc
tctcactatgccagtgtgtgggctgctgcagacatctcggaggaacagagactggagtcc
aggtccgtgtcagaaacaggaagccctattgtgagcgctgttatttccaactcaagtcca
ctggtaccatgtgaccaacatgatgtactccagattgaagagtaa
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