Kryptolebias marmoratus (mangrove rivulus): 108250372
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Entry
108250372 CDS
T05608
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03022
Basal transcription factors
kmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108250372 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
108250372 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108250372 (ercc3)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108250372 (ercc3)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108250372 (ercc3)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108250372 (ercc3)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108250372 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
108250372
NCBI-ProteinID:
XP_017295720
UniProt:
A0A3Q3BHS6
LinkDB
All DBs
Position
LG15:2129865..2136648
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AA seq
783 aa
AA seq
DB search
MGRKDKGDREKKSKKRYYEEDDDEEEATGNDSQEAIPAAAGKQVDELDTKRDEYGAKDYR
SQMQLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRGADGADTELITEVIHSKSAISKFVQEKGGPSTSQQPGDGQAS
NQQVPEDIFSYYEQMDKDEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAEKVMEWMRSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIQTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTREDQQQLLQKVLSAS
DLDAEEEVVAGEVGVRPQVSRRAGTMSSMSGADDAVYMEYQNRSGKASAASKNVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaaaagataaaggagatcgggagaagaagtccaaaaagaggtactatgaggaa
gacgacgacgaagaagaggcgacgggtaacgactctcaggaagccattcccgccgccgca
gggaagcaggtggacgagttggacaccaaacgggacgagtacggagccaaagactaccgc
tcccagatgcagctgaagaacgaccactcgtcccgcccgctctgggtggctccagatgga
cacatcttcttggaggctttttcaccggtgtacaaatacgcccaagacttcctagtggct
atcgcagagcctgtgtgccggccgaatcacgtccacgagtacaagctgaccgcgtattcg
ctgtatgcagctgtcagcgtaggcttacagacttcggatattatcgagtacctgcagaag
ctcagcaagacatccgttcctgatggaatcattcagttcattaagctttgcaccgtgagc
tacgggaaagtcaagcttgtgctcaaacacaacaggtattttgttgagagtgccttcccc
gatgtgatccagcgcctcctgcaggacaacgtgatccgagagtgtcgccttcgaggtgca
gacggagcggacaccgagcttattactgaagttatccacagcaaatcagcaatctctaag
tttgtccaagaaaaaggaggtccgtccacctcacagcagcccggggatggacaagcgtcc
aaccagcaggtcccagaggacatcttcagctactatgaacagatggataaggacgaagag
gaggaggaggagactcagaccgtgtcctttgagattcgccaggagatgatcgaggagctg
cagaagcgttgcatccagctggagtaccccctccttgcagagtacgactttcgaaacgac
tcggtcaacccggacatcaacatagacctgaagcccaccgccgtgctgcgaccctaccag
gagaagagtctccgcaagatgtttggaaacgggcgcgcacggtccggagtcattgtgctg
ccgtgcggagccgggaagtctctggtgggcgtgacggcggcgtgcacggtgcgtaagcgc
tgcctggtgctggggaactcctcggtgtccgtggagcagtggaaggcccagttcaagatg
tggtccaccatcgacgactctcagatctgccgcttcacctccgacgccaaggacaaaccc
atcggctgctcggtggccatcagcacctactccatgctgggtcacaccaccaagcgctcc
tgggaggccgagaaggtcatggagtggatgcggagccaggagtgggggcttatgatcctg
gatgaggtgcacaccatccctgcgaagatgttccgccgcgtcctgaccatcgtccaggct
cactgcaagctcggcctcacggcgacgctggtcagggaagacgacaagatcgtggacctc
aacttcctcatcgggcccaagctgtacgaagccaactggatggagctgcagaacaacggt
tacatcgccaaagtccagtgtgccgaggtgtggtgtccgatgtccccggagttttacaga
gaatacgtggccatccagaccaaaaagcgcatcctgctctacacgatgaaccccaacaag
ttccgggcctgccagttcctcatccgcttccacgagcggcgcaacgacaagatcatcgtc
ttcgccgacaacgtgtttgccctgaaggaatacgccatccgcctcaacaagccgtacatc
tacggccccacctctcagggagaacgaatgcagattctgcagaatttcaaacacaacccg
aagatcaacaccatcttcatctccaaggttggcgacacgtccttcgacctgccggaagcc
aacgttctgatccagatctcctcccacggcggatctcgcaggcaggaagcgcagagactc
ggcagagtcctgagagcgaagaaagggatggtggcggaggagtacaacgcctacttctac
tcgctggtgtcccaggacacccaggagatggcgtactccaccaagaggcagaggttcctt
gtggaccaaggatacagctttaaggtaatcacgaagctggcaggtatggaggaggaggac
ctgatgttctccaccagggaggaccagcagcagctgctccagaaggttctgtctgcttcg
gacctggacgctgaggaggaagtggtggctggagaagtcggcgttcgaccgcaggtgtcg
aggcgggccggcaccatgagctccatgtcgggcgccgacgacgccgtctacatggagtac
cagaaccggagcggcaaagcctccgcggcgagcaaaaatgttcaccccctgttcaaacgc
ttcaggaagtag
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