Kryptolebias marmoratus (mangrove rivulus): 108250484
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Entry
108250484 CDS
T05608
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108250484 (tdrd12)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
108250484 (tdrd12)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108250484 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108250484
NCBI-ProteinID:
XP_024858340
LinkDB
All DBs
Position
LG11:complement(2469276..2525463)
Genome browser
AA seq
1468 aa
AA seq
DB search
MPGCLITVAWDLPTQEMLKISILKVESPSCLWGRVVWGPGGVAGTKDHYDTLQAQMNLFY
HDVTQDLSRLKPALLEEGQAYVVYWAVKKSWCRAVMESVIIDSISCQALCLLVDYGERIV
ISSDQVRVALADFLQLPYWVRKFHLSRIKPTTLQVSVYDEKAELKPSSVWDSSTTLYLHK
LLQASTQTEAVLLEVESDSTSIELYLTINNIKICVNDDLVAKKFAYYSRHPADSNCLDGR
DWLPVMLSSNILTPIASKSSNRQTAQTKQLCCEHTVKSGISNPVDAGDWLTASSLPQGHL
PDLVTCDRNGKSLVLNELMDSTNQSRKSLEAAETKSDSSEDTDSSLAAALTENLSLFWFQ
KFLNPDSSYQQTLSDVDQNHELNGSQSKEMIGSVQQFELSEWRDTSNSSETILIPSHNSD
SVPLELQPKLTQSSSLSSEAEGDLYSSQCKHPADNQTNLNKSVELGQEAGGTWRTEDVWV
CLRFLEWLNPEPINSDPDSADNVISPTEPRMSGILVHSAQLEEPCNNLEDAPITDVLRQV
LKKKKYCTLSPADRYSWPAVARGYNTVIISHNTEQPLSYLAPLLSHIQLNSVFTSFTSSL
GPIAVLLCPGWERAQMVYDMLEESKVSQTLHPVIILVGIGKNEAKAVKIPKNCLLLVTTP
FTLVRLLSCHCFMFLRVYHLVLDKAEELFALVPDQMDTILQHFQKVTCSEETFCPKQLVV
VAKRWTNHMETLIGSHMPSPYIIISVPEEAALYGNVQQVILMTLESNKIQVLLGALDFSP
AVGQKSLIVTNSVQEVEDVFKAVSNKSAFCLKTHEGLTHQFDFVMEQWRKEIGPGTNVIL
VTTNDCLKCLGIKDATCLIHHGFPTSPKVFGSRLFCMAENFRNLCEGVCSLDQTESNSQV
LRSVLLPSERNASHIVGVLRYLKRTNALLPPELLAFAQGVHAAREDQKMDRPLCSYLKRF
GFCSKDSGVCPDRHQFHCQLDKSVLPASGVIEVVPLYIKSASVFFGRMVKKDDKCFDIMA
SEMVSYYADKKPGAKELLEGCLYAVQEDEVFHRVKILSIPEQDETLFFTVLVVFIDVGKE
DEVKSHQIFQLPEQFQSLPGQAIEVIICRVKPADAEINWHPKVTRTISQKVRGLQHQARA
VLSLGNTVFVDPMVRVTKVPGMKTFINEYNVQSEILNTGMAISNPDHLDLLRELCEKGLV
HSTKDNGSTHRLEEDSLSADIWIKTEETFRTADDMQVFPLDPPLNLNGSKRNQSTVQIPP
LSVCDQKSQLDIQTASRQRGTNTAELMQSVRDGGECCTSDASLHLLGKDLPEGCHHNTEG
VSDSNEADIRNSTLSFHPQVVWHQTLDSVILTVKLINPENQRWDFYPDRVVYSGRVNSQD
YRADLQLHQKIAADLCRLEMKSYEPVLKLVKQQQGYWERLATNKNMFVSYNMEHIDEDED
KALNDVCFVEDTGEHNWYVNSESGSESD
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgcctggttgccttataactgtggcgtgggatctgccaacccaggaaatgctcaaaata
tcaattttaaaggtggagagcccatcttgcctgtggggtcgggttgtttggggtcctggt
ggtgttgcggggaccaaggaccattacgacaccctccaggctcagatgaaccttttctac
catgacgttactcaggacttgagcaggctgaagcccgcgttgttagaggaggggcaggcg
tatgtggtgtactgggcagtgaagaagtcatggtgtcgtgctgtgatggaatctgtcatc
atcgactccatttcctgtcaggcgctctgcctcctggtcgactatggagaacggatcgtg
atctcctcagaccaggtccgggtagccctggctgatttccttcagctgccttactgggtc
aggaagtttcatctatcaagaattaaaccaacaacccttcaagtgtctgtatatgacgag
aaggcagagctcaaaccatctagtgtttgggatagctctactacactgtaccttcacaag
ttgcttcaagcatccacacaaacagaagctgtgctgctggaagtggagtcagactcaaca
tctattgaactgtatttgactatcaacaacatcaagatctgtgtgaatgatgacttggtg
gctaagaagtttgcatattacagcagacatcctgctgacagtaactgtctggatggaaga
gactggcttcctgtcatgttgtcctccaacattttaactccgattgcctccaaatcatct
aacagacaaacggcacaaaccaaacaactctgctgtgaacacacagtgaagtcagggatc
tctaatccagtggacgcaggtgattggctgacagcttcgtctctacctcagggccacctg
cctgatctggttacctgtgacagaaacggcaaatcactggttttaaatgaactaatggat
tcaaccaaccaatccaggaagagtctggaagctgcagagactaaaagtgactcatcagaa
gacacagactcatctctggctgcagctctgaccgaaaacctcagtttgttctggttccag
aagtttctgaaccctgacagcagctaccaacaaacactttctgacgtggaccagaatcat
gagctgaatggcagtcagtcaaaggaaatgattggatctgtgcagcagtttgagctttca
gagtggagggacaccagcaactcatcagaaactatattgatcccttcacacaacagtgac
tctgtaccactggagctgcagcccaaactgacccagagcagcagtctgtcaagtgaagct
gaaggtgatctttacagcagtcagtgtaaacatcctgcagataaccaaaccaatttgaat
aaatcagtggagttgggacaggaagcaggcgggacatggaggactgaagacgtctgggtc
tgtttgcgttttttggagtggttgaacccagaacctatcaactctgatccagactctgct
gacaatgtgattagtcccactgagcctaggatgagtgggattctggtccactcagcccag
ctggaggagccctgtaataacttggaagatgcgcccatcacagatgttctccgacaggtg
ttgaagaagaaaaagtactgcactttgtctccagctgaccgctacagctggccagctgta
gctcgtgggtacaacaccgtcattatctcccacaatactgagcagccactcagctacctc
gcccccctcctctcccacatccaactcaactctgtcttcacttccttcacctctagttta
gggcccatagcagtgctgctgtgtccaggctgggagagggctcagatggtctacgatatg
ctggaggagtccaaggtctcccaaaccctccacccagtcatcatcctggtgggcatcggc
aagaatgaagctaaagctgtgaaaattcccaaaaactgcctgcttttggtgaccaccccc
ttcactctggtccgtctgctgtcctgtcactgcttcatgttcttacgggtgtaccacctg
gttctagataaagctgaagagctgtttgctcttgttcctgatcagatggacaccatcttg
cagcatttccagaaggtgacttgcagtgaggagacattctgtcccaagcagcttgttgtt
gtggcgaaaagatggaccaatcacatggagactctgataggcagtcacatgccttcgccc
tacatcatcataagtgttcctgaagaagctgctctctatgggaatgttcaacaggtcatc
ctcatgactttagagagtaacaagattcaagtgctgttgggtgcgttggatttcagccca
gctgttggtcagaagtcattgattgtaacaaactctgttcaggaggtggaagacgtgttc
aaggctgttagcaacaaatcagctttctgtctgaagacccatgaaggactgactcaccag
tttgactttgtgatggagcagtggaggaaggagattggtcctggcactaatgttattctg
gtgaccaccaatgattgtcttaagtgtcttggtatcaaagatgcaacttgtctcatccac
cacggatttcctacctctcccaaagtgtttggcagcagactcttctgcatggctgaaaac
ttcagaaatctgtgtgaaggagtttgctctctggatcaaacagagagcaactcacaggtc
cttaggtcagttctgctgccctcagagaggaacgcctcccatattgttggagttcttcgc
taccttaagcgaactaacgccctgctgccccctgagctcttagcctttgctcagggggtt
catgcggctcgtgaagaccagaagatggatcgccctctctgcagctacctgaagaggttt
ggattttgcagcaaagacagcggtgtgtgtcctgatcgccatcaatttcattgccagctg
gataagtctgtgctccctgcatctggagtaattgaagttgtgcctctctacataaagtca
gcctcagtgttttttggacgtatggtcaagaaggacgacaaatgttttgacataatggcc
tctgagatggtttcttattacgctgacaagaagccaggagccaaggagctgctggaagga
tgtttatatgcagtgcaagaggacgaggtcttccacagggtgaagatcctctccatacct
gagcaagatgagactctgtttttcactgttctggttgtcttcatcgatgtggggaaagag
gatgaagttaagtctcatcagatttttcagctcccagaacagtttcagtctctgccaggc
caagccattgaagttataatctgcagggtgaaaccagctgatgctgaaataaactggcac
ccaaaggtcaccagaaccatcagccagaaggtccgaggtctgcaacatcaagcaagagct
gttctgagtctgggaaacactgtttttgttgatcctatggttcgagtcaccaaggtgcca
ggtatgaaaactttcatcaacgaatacaacgtgcaatctgagattctgaacactgggatg
gcaatcagcaacccagatcatctggacctgctaagagagctgtgtgaaaaaggtctggtc
cacagtaccaaagataacgggtccacacacaggctggaggaggattcattatctgcggac
atctggatcaaaacagaggaaactttcagaactgctgacgacatgcaggtgtttccactg
gaccctccactcaatctgaatggttccaaaagaaatcagtccactgttcagataccccca
ctgtcagtttgtgatcagaaatcccagttggatatacagactgccagcagacagagaggc
accaacactgcagagctgatgcaaagtgtcagagatggaggagaatgttgcacaagtgat
gcctctctccacctactgggaaaagatttacctgaaggttgtcatcacaacacagaggga
gtttctgacagtaatgaagcagacatcaggaattcgacactaagtttccatcctcaagtg
gtttggcatcagacgcttgactcagtgattctaacagtgaagttgataaatccagagaac
cagcgctgggatttctaccctgacagagtagtttacagtggcagagtgaacagccaggac
tacagagccgacctgcagctgcaccagaagatagcagccgacctttgccgcctggaaatg
aagtcctacgagccggttcttaaactggtcaaacagcagcagggatactgggaacggctt
gccaccaataagaacatgtttgtgagttacaacatggagcacattgatgaggatgaagac
aaagcactgaatgatgtgtgctttgtggaggacacaggagaacataactggtatgttaac
tcagagagtggcagtgagagcgactga
DBGET
integrated database retrieval system
