Kryptolebias marmoratus (mangrove rivulus): 108250766
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Entry
108250766 CDS
T05608
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03015
mRNA surveillance pathway
kmr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108250766 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108250766 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108250766 (sympk)
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108250766 (sympk)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108250766 (sympk)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108250766 (sympk)
U7-dependent histone pre-mRNA processing factors
108250766 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
PDS5
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
108250766
NCBI-ProteinID:
XP_017296283
UniProt:
A0A3Q3GDY2
LinkDB
All DBs
Position
LG6:2484863..2494633
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AA seq
1221 aa
AA seq
DB search
MMEVSSNQEETPSGVNMTTSEKVVELLNQAALISTDEKLNVLKQVQELIINKDPSLLDNF
LDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLRDDSVNVVKKAILTL
TQLYKVTLQWLVRSKAVSEMQEACWDLVTQMKEDVLIQLDSENDGVRTHAIKFTESLIIS
LSPRTPESNVPKRQEGDISLDRVPKDHAYIRYDALCEEGKSALEKLLKFMVHPAISSINL
TTALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPC
SLEFQGQISTLLLDLGMPQSEIARFTPAPREQRKRPRYEQYAEGKKVKMEPALIEDDEDK
EEPAPLAAPKPAVVPAPQSAIDLTAEFLHPLLTPENVANMVLISMVYLPDVMPASFQATY
TPVESAGTDAQIKHLARLMATQMTAAGIGPGLERCKAREDEAGKEGQAEDESSFKDCLIK
RKVPAVMVGQAISVVGGYSEKPAAPEAPSAAKRLPEPILPSAQTKMAGAGGRKKVFRLAD
VVQPFSDSQIEVLTSKAVKRILHSEKAIAQSGMTPVRVKLLSRLVTQFEGMMKEDVLEFI
LDDIRTRSDLAFSLLYQEYNTYLSQLPSGLLDSYDHCLFTLLSGLQEKPEQRDGLFTKLV
LEAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKV
RSTALSFLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVR
QCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENC
PKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKIEVIQALP
KLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLISLHNVDSNKCDMKSIIKATNL
CFAEKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQV
WKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAPLKSVFERCPEMRAPLLQHVLSFTPHQQA
HIPASIMAVLESNKKPEPKPVETVVETELEPAPAAAAVEEPPAATPTEPEPPAHLEPVAV
KEEEEPMEQEEAERTEPEEPADGVSQVDLPKAAESPAPRPEPAEEPMDETRPEPSDHQES
AREAETSTPEPEAGDDAEAAE
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggtttcttctaaccaggaggaaactcccagcggcgtcaacatgaccaccagc
gaaaaggtggtggagctcctgaatcaggccgctctgatctccacagacgagaaactcaac
gttctcaaacaggtccaggagctcatcatcaacaaggatccgtctctcctcgacaacttc
ctggatgaaataatcgccttccagacggacaagtccatcgaagtgaggaagtttgtaatc
ggattcatcgaggaggcgtgcaaacgggacaacgagctcctcctccggctgatcgccaac
ctgaacatgctgctgagggacgacagcgtgaacgtggtgaagaaggccatcctcaccctc
acccagctgtataaggtcacgctgcagtggctggtgcgctccaaggccgtgtcggagatg
caggaggcctgctgggatttggtcacgcagatgaaggaggacgttctgatccagctcgac
tcggagaacgacggcgttcggacgcatgccatcaagttcacggagtctctgatcataagc
ctgtcgccgcggacgccggagtccaacgtccccaaacggcaggagggagacatcagcctg
gacagagttcccaaagatcacgcctacattcgctacgatgctttgtgtgaggaggggaag
agcgcgctggagaagctgctgaagttcatggtccatccggccatctccagcatcaacctg
accacagcgctgggctccctggccaccatcgcccgccagaggcccatgttcatgtcggag
gtggtgcaggcgtacgagacgctgcacgcgaaccttccgccgactctggccaagtctcag
gtcagcagcgtcaggaagaacctgaagctgcacctggtggcggtgctgaagcacccgtgc
agcctggagttccagggtcagatcagcaccctgctgctggacttgggcatgcctcagagc
gaaatcgcccgcttcacccccgcgccgcgggagcagcgcaagaggcctcgctacgagcag
tacgccgaagggaagaaggtcaagatggagccggcgctcatcgaggacgacgaggacaag
gaggagccggcgccgctcgccgctccgaagccggccgtcgtcccagcccctcagtcagcc
atcgacctgaccgccgagttcctccacccgctgctgacgccggagaacgtggccaacatg
gtgctgatcagcatggtgtacctgcccgacgtcatgccggcgtccttccaggccacgtac
acgcccgtggagtcggccggcaccgacgcgcagatcaaacatctggctcggctgatggcg
acgcagatgaccgcggccgggatcgggccaggtctggagcgctgcaaagcccgggaggac
gaggcgggcaaagagggacaagcagaggacgaatcgtcttttaaggactgtctcatcaag
cgtaaggttcccgccgtgatggtgggccaggccatctccgtggtcgggggttactccgag
aaacccgccgcccccgaggcaccatcggcagccaagaggcttcctgagcccatcctgccg
tccgcacagaccaagatggcgggggcgggcgggaggaagaaggtgttccgcctggccgac
gtggtccagccgttttccgactcgcagatagaggtgttgacttccaaggcggtgaagcgg
atcctgcactcggaaaaggcgatcgcgcagagcgggatgactcctgtccgggtgaagctc
ctctcccgcctcgtcacgcagtttgaagggatgatgaaggaggacgttctggagttcatt
ctggacgacatcaggacgagaagcgacctggcgttctcgctgctctaccaggagtacaac
acgtacctgagccagctgccgtcggggctgctggacagctacgaccactgcctcttcacg
ctgctgtcgggcctgcaggaaaaacccgagcagagggacggactcttcacaaagctggtc
ctggaggctcccatcatcaccgagtcggcgctggaggtgatccgacgctactgcgaggac
gagtctcgagtctacctgggcatgacgacgctgaaggagttgatcgtcaagcgcccgtcc
cggcagttccagtacctccacgtgctcctggacctcagctcgcacgagaaggagaaggtg
cgctccacggcgctgtccttcctgaagcgcatgtacgagaaggaccacctccgagattac
atcgagaagttcgccctgaactacctgcagctcctggtccacccgaacccgccgtcgctg
ctgtttggggccgacaaggacacagaggtggccgccccctggaccgaggagacggtgaga
cagtgtctcttcctctacctgtccctgcttcccctgaaccaccggctcgtccacgagctg
gcttccgtttacaccgaggccatcgccgacatcaagcgcagcgtcctccgagccatcgag
cagcccatccgcgggatggggatgaactctccggagctgcttctcctggttgaaaattgc
ccgaaaggggcggagactctcgtcacacgctgcctgcacattttaacagataaagtgcct
ccgtccccggagctggtggagcgagtccgagacctgtaccacaaacgagtcccagacgtc
cggttcctgatccccgtcattaacggcttggagaagatcgaggtcatccaggctctgccc
aaactgatcaagctgaacccgatcgtggtgaaggaggtcttcaaccggctgctggggact
cagcacagcgagggcagctcgtcggtgtcgcctctgactccaggagacctgctcatctcg
ctgcacaacgtcgactccaacaaatgcgacatgaagtccatcatcaaagcgaccaacctg
tgcttcgcggagaagaacgtttacacctcggaggtgctggcggtggtgatgcagcagctg
atggagcagaaccccctccccatgctgctcatgaggaccgtcatccagtccctcaccatg
tacccccgcctgggcggcttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtg
tggaagtacccgaaggtgtgggagggcttcgtgaagtgctgccagcggacgaagcctcag
tcctacagcgtgctcctccagctgccgccggcgccgctgaagagcgttttcgagcgctgc
ccggagatgcgagcgccgctgctgcagcacgtcctgtccttcaccccccaccagcaagcc
cacatcccggcctccatcatggcggtcctggaatccaataagaagcctgagccgaagccc
gtggagacggtcgtggagacggagctggaaccagccccagctgccgcggctgtggaggaa
ccccccgccgccaccccgacggaaccggagccgcccgcccacctggagccggtcgccgtg
aaggaggaggaggagccgatggagcaggaagaggcagagcgaacggaaccagaagaacct
gctgacggcgtttcacaggtggatttaccaaaagcagccgagtctccggcgccgcgtcca
gaaccggccgaggagccgatggacgagacccgacccgaaccgtcggaccaccaggagtcg
gcccgagaggctgaaaccagcaccccggaacccgaggctggagacgacgccgaggctgcg
gagtaa
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integrated database retrieval system
