Kryptolebias marmoratus (mangrove rivulus): 108250975
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Entry
108250975 CDS
T05608
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04136
Autophagy - other
kmr04140
Autophagy - animal
kmr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108250975 (atg16l1)
04136 Autophagy - other
108250975 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108250975 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
kmr04131
]
108250975 (atg16l1)
03029 Mitochondrial biogenesis [BR:
kmr03029
]
108250975 (atg16l1)
Membrane trafficking [BR:
kmr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
108250975 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
108250975 (atg16l1)
Mitochondrial biogenesis [BR:
kmr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108250975 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
eIF2A
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Crescentin
Beta-prop_DCAF12
DUF4200
PUMA_CC
HEF_HK
HALZ
NET2A
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
108250975
NCBI-ProteinID:
XP_037835785
LinkDB
All DBs
Position
LG2:complement(184507..233420)
Genome browser
AA seq
598 aa
AA seq
DB search
MEWKRHVSEQLKLRDRIQRQTFEEIVHQYNRLLEKSDLQAVLTERYQTDKYDVQRGHEAG
SADSARSDLLQQEMAQMRIRHQEELTELHKKRGELAQSVIELNNQIQQKDREIQTNEARM
LEYQQQISSLEGDCRELRNSLQELEQANQTLKDEYDALQITFSALEEKLRKTTEDNQELV
SRWMAEKAQEANRLNAENEKDSRRRQAKLQKDLADAAKEPLPIEPDDDIEVLAEDGVKGA
GETSPNRPMSKTLSRKPSQPPPGGLLDSISNIFGRRRSANSFSTSPEPTESPSGLCAEVR
VPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVKLWEVVAGRCEAKGALTGSNAGI
TSIEFDSAGSYLLAASNDFASRIWTVEDYRLRHTLTGHSGKVLSARFLLDNARIVSGSYD
RTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVREIELMG
RVTSLDLNHDRSELLTCSRDDLLKIIDLRTNAIRQTFSAQGFKCGADWTRVTFSPDGSYV
AGGSAEGALYVWNVLTGKVDRTLDRNHNSAINSVSWSPSGAYVASVEKGSKAILWSDM
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggagtggaagagacacgtctcagagcagctgaagctccgagaccggatccagagacaa
accttcgaggagatcgtccaccagtacaatcgtctcctggagaaatcagacctgcaagcc
gtccttacagagagataccagacagacaaatatgatgtccagaggggacatgaggccgga
tccgcagactcggcccgcagcgacctcctgcagcaggaaatggctcagatgaggattcgc
catcaggaggagctgacagagctacacaagaaacgaggagagctggctcagagtgtgatc
gaactcaacaaccagatccaacaaaaggaccgagagatccagaccaacgaggccagaatg
ttggagtatcagcagcagatctccagcctggagggagactgtcgggagctgaggaacagt
ctgcaggagctggaacaagccaatcagacgctgaaggacgagtatgacgccttgcagatc
accttctcagctctggaggagaaactgaggaagaccacggaggacaaccaggagctggtg
tcccgctggatggctgagaaggctcaggaggccaaccgactaaacgcagagaacgagaag
gacagcaggcgccgacaggccaaactgcagaaggacctggctgacgccgccaaagaaccg
ctgcccatcgagccggacgacgacattgaggtgctggctgaggacggagtgaagggagca
ggagagacgtcccccaaccgacccatgagcaagactctcagcaggaaaccgtcccagccg
cctcctggtggtctgctggactccatctccaacatctttggcaggcgtcgatctgccaac
tccttcagcacgtcgccagaacccaccgagtcgccttcaggactgtgtgcagaggtccga
gtgccgtccacggcgctgcacgtctttgaagcccatgacggagaggtgaacgctgtgagg
ttcagccccggatcccgtctcctagcaacaggagggatggaccgcagggtgaagctgtgg
gaggtggtcgcaggtcgctgtgaggctaaaggagctctgaccggcagcaacgcaggaatc
accagcatcgagttcgacagcgcgggatcctacctgctggctgcttccaatgactttgcc
agtcggatctggactgtggaggactacagactgaggcacaccttgacgggtcacagcggg
aaggtgctgtcagcacgcttcctgctggacaacgctcgcatcgtgtcggggagctacgac
cgcacgctcaaactgtgggacctgcgcagcaaagtctgtatgaagacggtgttcgccggc
tccagctgtaacgacatcgtgtgcacggagcagtgtgtcatgagtggacactttgataag
aaggtccggttctgggacatccgggcggagagcatcgtgcgggagatcgaactgatgggt
agggtgacgtctctggacctgaaccacgaccgcagcgagctgctcacctgttccagagac
gacctgctgaagatcattgacctgcgcaccaacgccatccgacagaccttcagcgctcaa
ggcttcaagtgtggagctgattggaccagagtcactttcagtcccgacggcagctacgtt
gctggaggatcagccgagggagcgctgtacgtctggaacgtcctgacggggaaagtggac
cgaactctggaccgaaaccacaactctgccatcaactcggtgtcgtggtcgccgtcagga
gcgtacgtcgccagcgtggagaagggcagcaaggccatcctgtggtccgacatgtga
DBGET
integrated database retrieval system
