KEGG   Kryptolebias marmoratus (mangrove rivulus): 108251207
Entry
108251207         CDS       T05608                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
  KO
K13175  THO complex subunit 6
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108251207 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kmr03019]
    108251207 (thoc6)
   03041 Spliceosome [BR:kmr03041]
    108251207 (thoc6)
Messenger RNA biogenesis [BR:kmr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108251207 (thoc6)
Spliceosome [BR:kmr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108251207 (thoc6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WDR55 ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_2nd EIF3I Beta-prop_IFT122_1st Beta-prop_CAF1B_HIR1 Beta-prop_SCAP NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_IP5PC_F Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_NUP159_NUP214 WD40_like Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 TPR_Nup160_C
Other DBs
NCBI-GeneID: 108251207
NCBI-ProteinID: XP_017296902
LinkDB
Position
LG12:complement(610590..613729)
AA seq 324 aa
MEPVELLHMSVFSQSFSPCGRFLAAGNSYGEIGLFSLAAALSPDATAANQKPVLTFTAHK
GPVFSLLSNDCVLLSAGNGEISAWSWTELTKKNVKPLWTKRPNYNRSGLEIPEINSMVLN
PQDNSLVVGAGDNNVHVLDLEHGVFKTVLQGHTDYVHCVCVREREAELLSGSEDGAVRMW
DSRTGQCVHCIEVYKYESCARPQYGKWISCVTTDSDWMLCGGGPSLSLWHLRSLSPTSMF
PLSGCQRQAAFHQDKILAVGEGAFVSHCLLGGEVKAQIPCTPSSLNTLQLNSNSSEHRVL
TVGGSSSHVDVFTNLSYRAFSLSF
NT seq 975 nt   +upstreamnt  +downstreamnt
atggaacccgtagagctcctccacatgtcggttttctctcagagcttctctccctgcgga
cgcttcctggctgctggaaacagctacggcgagatcggcctgttcagcctggctgcagct
ctgagtccggacgccacagcagccaatcagaagcctgttctgaccttcacagctcacaaa
ggtcccgtcttcagtctcctgtccaacgactgcgtcctgctgagcgcaggaaacggcgag
atcagcgcctggagctggactgaactcaccaagaagaacgtgaagcctctgtggacaaag
agaccgaactacaacaggtctggtctggagatcccagagatcaactccatggtccttaac
ccacaggacaacagcctggtggtcggcgcgggggacaacaacgtccatgtcctggacctg
gaacatggagtctttaagaccgtcctgcagggtcacacagactacgtgcactgtgtgtgc
gtccgggagcgggaggcggagcttctgtcaggcagtgaggatggcgccgtgaggatgtgg
gacagcaggacgggtcagtgcgttcactgcatcgaggtctacaagtacgagagctgcgcc
cggcctcagtacgggaagtggatcagctgtgtgaccacggactctgattggatgctgtgt
ggaggaggtccttcgttgtctctgtggcatctgcgctctctgtctccgacctccatgttt
cctctgagcggctgccagcggcaggccgccttccaccaggacaagatcctggcggtgggg
gagggtgcctttgtgtctcactgtctgctgggcggagaagtcaaagctcagattccgtgc
acaccgtcgagcctcaacactctgcagctgaacagcaacagctccgagcaccgggtgctg
acggtgggcggcagcagcagccacgtggacgtcttcaccaatctgtcgtaccgagcgttc
tcgctcagcttctga

DBGET integrated database retrieval system