Kryptolebias marmoratus (mangrove rivulus): 108251390
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Entry
108251390 CDS
T05608
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108251390 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108251390 (patl1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108251390 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
108251390 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108251390
NCBI-ProteinID:
XP_017297156
UniProt:
A0A3Q3BFD9
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Position
LG3:29573876..29582210
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AA seq
825 aa
AA seq
DB search
MFRFQSMDDDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGFGLGGGGVGGDLGLGAEHSAAARLPSSSGQPPLQSSLPSFSFSSSSSGLPPQDADDR
AREGGLAESLARLILEADPAIAGVGAAERPSPSPGSAGSGLSALRGLDQPRVLPQSSSIP
HQQHPQHQLPPGPPTSGLPPSSMLSYQQQQQHLLRRGPAPMPQMNSHSIWENSMGFGPVS
VSPGLSTHMEDSPLMSIIKEVGLPKRPPQGRTDEGRDLSERVPPPRSSSPVIGSPPVRAV
PIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYHAPFPERLSPNALLNIANSPLCRGPF
PPRVGPVLSQIQRAQLLNSQVGGFPRGGPAPPLLPGGGFRPFFGGPPPPHGHRMGPPPPH
GPPNHTPPIRHNTTHLHPQHRRMLTQRLQSRGGDRSRTGMDRRSRDPYSNLMSQKEKEWV
TKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKERDSSSKKEHATKLITPQVAKVEHTYR
PVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLL
EVQDFEKRFLQTPEEEREALLEQHKTNTEQLCSSLREKEWDDRVSDELCVMIMSVRKGKR
LISRLLPFLPSTQAAAVVMAIARNLPALAKKDKQEQVLFWLVEPVSAIVQSLSSSALTDL
LQELQGSEGQLAAVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTREL
LGVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISASSR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccatggatgatgactgtacgctggaggaggaagatgaggggctg
atagaggaggaagatgaaattgatcagtttaacgacgacaccttcggagctggggccatt
gacgacgactggcaggaggagcacaaacgtctcgctgagctcgacgagcgcgatgggttg
ggggcggggtttgggttgggaggaggcggggtcggaggggatttgggtttaggagccgag
cactcggccgccgcacgtctcccttcgtcttcgggccaacccccccttcagtcttccctc
ccgtcgttcagcttctcctcgtcttcctctggactgccgccacaagatgcagatgaccga
gcgagagaaggcggcctggccgagtcgttggcccgactcatcctggaggcggacccggcc
atcgctggggtcggagcggctgagaggcccagtccgtctcccggctctgcaggatccggt
ctgtctgctctgcgcggactggaccagccccgagtcctgccgcagtcctcctccatccct
caccagcagcacccccagcaccagctgcctcctggaccccccacgtcaggccttcctccc
tcgtccatgctcagctaccagcagcagcagcagcacctgctgcgccgaggccccgccccc
atgcctcagatgaactctcacagtatctgggagaacagcatgggttttggaccggtcagc
gtgtctcctggactgtccacacacatggaggacagtccgctcatgtctataatcaaagag
gtgggtcttcctaagcgacctcctcaggggagaaccgatgaaggacgggatctgtcggag
agggttccgccaccgcgctcctcctcccccgtgattggctctcctcctgtgagggcggtg
cctattgggactccgcccaagcagccgatgagccacgccctgaaccatcagatccaccac
cccacggcggttcacgtgagagcgccggtccagcaccggtaccacgcccctttccctgag
cgcctgtcgcccaacgccctcctgaacatagctaactctccgctgtgccgcggcccgttt
cctcccagagtcggtccggttctgtctcagatccaaagagcccagctgctcaactcccag
gtggggggttttcctcgcggtggccccgcccctcccttgttacctggtggcggcttcagg
ccgttcttcggaggcccccctcctccacacggccacaggatgggcccgccgcctcctcac
ggaccccccaaccacacgcctcccatccggcacaacaccacgcacctccacccgcagcac
cggcgcatgctcacccagcgcctgcagagccgaggaggggaccgcagcaggacgggaatg
gaccggcgcagcagggacccctacagtaacctgatgtcccagaaggagaaggagtgggtc
accaagatccagatgatgcagctgcagagcactgacccgtacctggacgactactactac
cagaactactatgaaaagatggagaaacgtcaggagaaggagcgagacagcagcagcaag
aaggaacacgccaccaagctcatcacgccacaggtcgctaaggtggagcacacctacagg
cccgttcagttcgccggctctctggggaagctgacggtgtcgagtgtgaacaacccgagg
aagatgatcgacgctgtggtgacgactcgctccgacgatgaggagaaaagagagaagcag
gtttggaacaagaggcgacagatcctgtacaccgtggagaagatgtacagtctgctcctg
gaggtccaggacttcgagaagcgtttcctgcagaccccggaggaggagcgggaggctctg
ctggagcagcacaaaaccaacacagagcagctgtgcagctcgctgagggagaaggagtgg
gacgacagagtgagcgacgagctctgtgtgatgatcatgtccgtgaggaaaggcaagcgg
ctcatctccaggctcctccccttcctgccttcaacacaggctgccgctgtcgtcatggcg
atcgctcgcaacctccccgcattagccaagaaggacaaacaggagcaggtgttgttctgg
ttggtggagccggtttctgccatcgttcagtcgctgtcgagctccgccctcacagacctg
ctgcaggagctccagggcagcgagggccagctggctgcggttctgcagaacaagttcggt
gtgacgctgctctacctgatcctgagcgaaggagagaggatgcagagctccgaccccaac
tgtcagctgatggacgacaatcgatggacggagctggtgttttctgtgaccagggagctg
ctcggcgtcccgtcttcatccctgtctccgccccttttcacccctcccaacctgctgtcc
ctgttctcacgctacgtggaccggcagaggctggagctgctgcaggacaagctacagatc
tctgcttcgtccaggtag
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