Kryptolebias marmoratus (mangrove rivulus): 108251402
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Entry
108251402 CDS
T05608
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108251402 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108251402 (edc4)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108251402 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
108251402 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
108251402
NCBI-ProteinID:
XP_017297168
UniProt:
A0A3Q3BPT9
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All DBs
Position
LG11:complement(26034767..26058311)
Genome browser
AA seq
1392 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADSQPSDGQRKLSFNGELNGLLGAGLLGSADR
SAMSESTRPISTDISILQESQRICLTGDDGTTCIPITSNNVEIVASQDSSISSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVCNSFLAYAIKGANNHAMIRVLSLDFNERTLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTFTGNKILDQIVVHIQRPENTPLNSHRRLVWC
PFILDDNEENQDDASQTLALLHEDRAEVWDLEVLRANNSSWPVDATELKEGLITIKGHTK
RVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGRRPLSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPLTSSVLPSLKASLDLSA
EYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTLSRLRHTEVL
PAEEESESLSAEGAQGPAESKSGIQIQLYCVHTKSLQDVQIWFQPNLGSNSGGFLHRSDS
QDGLAAFSDHLTDQSSDKESGSGSQTDLRKIPPLPAPSDFLSNVATGGGAMPKLMTPDAF
MTPSTSVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPIRGDNNSSSLGHSASSSS
PRAASAVLLPGLESLPSLGSPTGPLALDSPQILDSPLLPPLASPTRARSPDVISSASTAL
SQDMPEIASQTLQLQRGHVSGLETLPLSALQTDSMASAASALHLLTSPRSAGSNSLVPLE
LGGADVPVSGAAEAEPRLSNQPSLLENALSQENPGAAGGSSDGNISHTPWPAAPDITRET
RNSLRDNGLGDCSREESQERHLSSPYHRRSYHLPQSDSQDAAAEQSDPDDEISSLASSSG
NCGSRSSHRIPVKDWKSSPRGSPKLKRKVKKDDGEFSQSRHMDPGQFNAEAQDELLMLLR
TQQRELTELSALVETMPGTIMAQVEHLLLKHQEQEHRRLDRVLAESQNHQQRLQEQLGQQ
LGHALSSALTNRMDKVLRDELKKTVPQTISKSLEPVTGQLNNTIAAKLTAVEVTLKDNIS
KVVKSKNLTDAIGRAAAEAIQGPIQAAYKDAFQSTVLPVFERGCQTMFQQINDSFKQGTH
EYIQQLDTHMKNRKQREQDARDPMIGQLQQMIDSFQSSTDQLASSITATVRAEVQHQMQM
MVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQA
NILQFLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQSPCPLSQPVLLSLIQQLS
SNLSTRSELKISYLEDAVMNLDHSDPLTRDHMSSVLTQIRPKLIAFLQQEPHSPLSKRAR
RLLMMLQGLVSH
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaattctaatatagatatcgagggggccacccagcatctccgggacatcctg
aagctcgaccgaccggggagcagcgccgactctcagccaagtgacggtcagagaaaactc
tccttcaatggggagctgaacggtttgctgggagcggggctgttaggaagcgccgatcgg
tcagccatgtcggaatctaccagacccatctccacggacatcagcatccttcaggagagc
cagaggatctgccttactggtgacgatgggaccacctgcatccccatcacctccaacaac
gtggagattgtggcgagtcaggactccagcatcagcagcaaggcacgagggagcaacaag
gttaagattcagcctgttgccaagtacgactgggaacacaagtattattacggccgactg
atcgccgtgtgcaactccttcctggcttacgccatcaaaggagccaacaaccacgccatg
attcgtgttctgagtttggattttaacgagcgcaccctgctgaaggggttcacgggggcc
gtcacggacctggctttcgcccacctcgactcgtctctgctgggttgcgttgacgaggcg
ggaaacctgatggtttggcagctcactttcactggcaacaaaatcctagatcagatcgtg
gtgcacatccagcgcccggagaacacgccgctgaactcccaccgccgcctcgtgtggtgc
ccgttcatcctggacgacaacgaggagaaccaggacgacgccagccagactttggccctc
ctgcatgaagacagggcagaggtttgggatctggaggtgttgagggccaacaacagcagc
tggcctgtcgacgccactgagctgaaagaaggtctcatcaccatcaagggccacaccaag
agagtcagcgaaggagctttgtctcctgatggaactgtgttggccacagccagccatgat
ggatacatcaagttctggcagatctacatagaaggaggacaggacaagcccagatgtctt
cacgagctgcggccgcacggaagacgtcccctctcctgtctcctgttctgtgacaaccac
aagaggcaggatccagaggttcctttctggaggtttctgataaccggagcggaccagaac
caggagctgaagatgtggtgcaccgtttcctggacctgcttacagaccatcaggttctct
ccagatccgctgacctcatcggttctgccgagtctgaaggccagtttggatctttctgct
gaatatctgattctcacagacgtgcagagaaaggtcctgtacgtgatggagctgcggcag
gacctggagaagggaaaagccagtttcacggcggtgtcggagttcctgctcacccaccct
gtgctcagcttcggggtgcgggacgtcaccctcagccgcctgcggcacaccgaggtcctc
cccgcagaggaagaaagcgagagcctgtccgcagagggcgcccaaggacccgcagagtcc
aaatctgggatccagattcagctctactgtgttcacaccaagagtttgcaggacgttcag
atctggtttcagcccaacttgggatccaactcaggaggatttcttcatcgctccgattcc
caggatggtttggcagcgttttcagatcatctcaccgaccagagctccgacaaggaatct
ggaagtggctcgcagacggacctcagaaaaatcccgccgcttcccgctccctccgacttc
ctgtcaaacgtggcgaccggcggcggcgcgatgcccaaactgatgactccagatgccttc
atgacgccgagcacttcggtcccggcgtctcccggtagcagcgccagcagcctgaccatc
gtgaccgccatcagcagcaactcggactctactaacagagcgatggacgacgtgagtcag
agtcccatcagaggagacaacaacagcagcagcttgggacactcggcctccagcagcagc
ccgagagctgcttctgccgtgctgctgcccggactcgagagcctgccgtcgttggggtct
cctactggtcctctggctcttgacagtcctcagatcctggattctcccctcctgccgccc
ctggcctctccgaccagagcccgctccccggatgtcatctcctcggcctccacggctctg
tcccaggacatgccggagatcgcctcgcagaccctgcagctccagaggggacacgtgtcc
ggtctggagaccttacccctctctgcccttcagacggacagcatggcgtctgcagcttct
gctctgcacctgctgacctcaccgcgctccgccggcagcaacagcttggtgcccctcgaa
ctgggaggcgcagacgtgccggtgagcggggcagcagaggcagagcccaggctcagcaac
cagccgtctcttctggagaacgccctgtcgcaggagaaccccggggcagccggaggctcc
tcggacggtaacatcagccacacgccgtggccggccgccccggacatcaccagagaaacc
aggaacagtctcagggacaacggtctgggggactgttcgagggaggagtctcaggagaga
cacctgagctcaccgtaccaccgccgctcctatcacctcccgcaaagcgacagtcaggac
gctgcagccgagcagagcgaccctgatgacgagatctccagtctggcttcgtcttctggg
aactgtggctcccgctcctctcacagaatacccgtcaaagactggaagtcctcgccgcga
ggctcgccgaagctcaagaggaaggtcaagaaagatgacggtgaattttctcagtccaga
cacatggatcctggacagtttaatgcagaagctcaggacgagttgctgatgctgctgcgc
acccagcagagggagctaaccgaactgtcggcgctggttgagaccatgcctggtaccatc
atggctcaggtggagcatttgctgctaaaacaccaggaacaggagcaccgcagactggat
cgagtcctggcggagagtcagaaccatcagcagcggcttcaggagcagctcggccagcag
ctcggccacgccctcagctcggcgctgaccaacaggatggacaaagtgctgcgagacgag
ctgaagaaaaccgtcccgcagacgatttctaaaagtctggagccggtgacgggccagctg
aacaacacgatagctgctaaactgaccgccgtggaggtcaccctgaaagacaacatcagc
aaggtggtcaaatccaagaacctcaccgacgccatcggtcgagcagcagccgaagcgata
cagggacccatccaagcagcctacaaagacgctttccagagcaccgtgctgcccgtgttt
gaaagaggctgccagaccatgtttcagcaaatcaacgacagcttcaaacaaggcacgcac
gaatacatccagcagctcgatactcacatgaagaaccggaagcagagagagcaggacgcc
cgggaccccatgatcgggcagctccagcagatgatcgacagcttccagagctccaccgat
cagctggccagcagcatcacagccaccgtccgggccgaggtccagcaccagatgcagatg
atggtgggaaatctgcaggagtccattctcagccacgtgcagcggatcgtcaaaggggag
gtgagcctggccatgaaggagcagcaggcggtggtcacctccagcattatgcaggccatg
aggtctgcggctggaacccccgtccccacggcgcacctcgattaccagacgcagcaggcc
aacatcctgcagttcctccagcagggccagctcaaccaggccttccagcaggctctgtcg
gcgaccgacctgaacctggtgttgtacgtgtgcgagaccatcgactcgcagcaggtgttc
ggtcagagcccctgccctctcagccagccggtgctgctctctctcatccagcagctctcc
tccaacctctccacccgctccgagctcaaaatcagctacctggaagacgccgtgatgaac
ctggaccacagcgaccccctgaccagagaccacatgtcgtcggttctgacccagatccga
ccgaagctgatcgccttcctgcagcaggagccccacagtccgctcagcaagagggcgcgg
cgcctgctgatgatgctgcaggggctggtcagccattag
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integrated database retrieval system
