Kryptolebias marmoratus (mangrove rivulus): 108251430
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Entry
108251430 CDS
T05608
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108251430
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108251430
NCBI-ProteinID:
XP_017297227
UniProt:
A0A3Q3BFK1
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Position
LG3:complement(29469511..>29481074)
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AA seq
1436 aa
AA seq
DB search
SGASGVSGVLGAGGGYKEPRRESSSMSYSFGSSGKEGKRDGGLGAVTVSTVTKTRSTSGG
SAETKRGSSSSSPYSPTKERKTVTTMAAALSEVFAESSSSNSSPEYNRKDYGILSATSGS
ATRGRTQSRESQIRARLQSASPPARWTELDDVKRLLRGNRSTSTSPTQSPNNTLPIPRKA
SVETRAPPESPTEQYGSVWSGDAGGGFGFNTNPNNYSTTSTLYQSGLQNNRTLGSPSVTA
GLSASSSAPVYGVQNNLTGPPVLGTPGSSSQIVYGVQKNVSGMSTTAVRPGGPSSPSSPG
GPTNYEASGKDFNFVLIEKENAPIKKETERLVMAKDSGKHFVSAAPSSGTFSEDSLKREK
QKLFSSSEERTDAKSLSLKAGTKDKATYAEIRKDDSGFGFCSCCSWWKWLLGLLLALLLL
FGLLFGLIALGEEVRRLKNRVETLEAITGTTSARSSRLSGSGINIIDPLDSEFTDRSSSG
STITHSDNTINLGAAGQGGGPGSGPGQDSAALQRTVHQLVKAELQSSSVRETLVYSLKGE
RGPPGPKGDPGPLGQKGDNGFQGQPGPPGQIGHPGPDGPRGPKGNPGEPGPEGQPGPRGR
EGPMGPRGETGPAGLGQKGDKGPQGETGRPGPVGSPGPVGPKGAAGEHGAPGNSGAPGLK
GVQGEAGPSGPKGDRGAPGVPGTKGDQGERGPRGPAGEPGTSGPQGPSGPKGSKGSTGEA
GSVGLPGVRGPPGLPGDVGPPGSPGLQGPPGVAGNPGQPGSKGEPGSPGKIIGPISSDTV
AIPGPPGPAGPPGPAGLPGLSGPIGPAGVPGQPGPKGDSGEKGDKGEQGKRGEPGAGPPG
PSGPPGLPGPPGHPGPQGPPGESKQGPPGRRGPPGEPGVGDPGPPGKKGEPGSFLPTSET
FFAGPPGPPGPLGPQGPPGDQGPQGYQGEPGQPGLPGSPGEPGVGFPGPPGPEGPQGPKG
DPGGPGILGADPGSIHVPGPPGSPGPPGPPGPPGSESASVGQYIADYLHSDGIRQYLAGP
PGPPGPPGEPGFLSSSEDGLVDKVASRVIAYIQSSGPGAPGPPGPPGSVSVNDIINLLQR
EDVRAYITGPPGPPGPPGGPGYGGYPFNTQDIAERVYSLMKDRGVLGSPGPPGPPGPPGN
LLATGFQSLVGPPGPPGTPGAPGPQGPPGPPGTPGFGSYVSSDMRDYLQSVSLTGPPGPP
GPPGPEGPPGPIGQTVSFTDLTAGEKLKAERQEYVRSVDGLRGAMFGLPGPPGPPGPPGH
KGEPGSREASPDAANYSIMVKKVTDYIKTHGVLEDILRGPPGPPGPPGPAGYGRWSGFHG
NTTDLMELIRTLQHDVEQNQNQNQGPPGPPGPPGPPGESRLFGSHTNISDMMDYIKTHGA
IVGPPGRPGLKGDTGRPGLKGAKGERGLPGAQGHTGPKGDFSLMTAKRRRSAGLEV
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
tcaggggcctcaggggtctcgggggtcttgggggcaggaggggggtataaagagcccaga
agggaatcctctagcatgtcctacagttttggaagcagtggtaaggaaggaaaaagagac
gggggtctcggtgctgtgaccgtctccacggtaaccaagaccaggtccacttcaggaggg
tccgcggagacgaagaggggctcatcatcatcgtctccttattcccccaccaaggagagg
aagactgtgaccaccatggcagcggctctgtcagaggtctttgctgaaagttcaagcagc
aactcgtccccggagtacaacaggaaggactacggaattttaagtgcaacttcaggttct
gccactagagggagaactcaaagcagagagagtcagatcagagccagacttcagagtgct
tctcctccggcgagatggacggagctggacgatgtgaagcgcctgctgaggggaaaccgc
tccaccagcaccagccccactcagtcccccaacaacacgctgcccattcccaggaaggcc
agcgtggaaacccgagccccccctgagagccccacagagcagtacggcagcgtttggtcc
ggggacgcgggcggagggttcgggttcaacacgaaccccaacaactactccacaacctcc
accctttaccagtcaggacttcagaacaaccggactctgggttctccctctgtgaccgcc
ggcctgtctgccagcagctccgctcctgtgtacggtgtgcagaataacctgacgggcccc
ccggtcctcggcacccctggaagcagctcacagatagtttatggagtgcagaaaaatgtg
tcggggatgagcacgacagcagtgagacccggcggtcccagcagtcccagcagtcccggc
ggtcccaccaactacgaggcttcaggaaaagactttaattttgtgctgatagagaaggaa
aacgctccgatcaagaaggagacggagcggctcgtcatggccaaagactccgggaaacac
tttgtgtcagccgctccttcctcaggaacgttctctgaagactcactgaagagagaaaaa
cagaaacttttctccagctcagaggaaagaaccgatgcaaaatcgttgagcctgaaagct
gggacgaaagacaaagccacgtatgcagagatccggaaagacgactctgggtttgggttc
tgctcctgctgcagctggtggaagtggctcctgggcctcctgctcgccctgctgctcctc
ttcggcctcctcttcggactcatcgctttgggtgaggaggtgaggcgcctgaagaaccgc
gtggagaccctggaggccatcaccgggaccacatccgccaggtccagccgcctgtcaggc
tccggcatcaacatcatcgacccgctggactcagagttcactgacaggagctcctccggc
tccaccatcacgcattcagataacaccatcaacctgggagctgctggtcagggaggaggt
ccagggagcgggccgggtcaggacagcgccgccctgcagagaaccgttcaccagctggtc
aaggctgaactccagtccagttctgtcagagaaactttggtttattctctgaagggtgag
aggggaccaccaggaccaaaaggtgatccaggaccactaggacagaaaggtgataatggc
ttccagggccagccaggtcctcctggacagatcgggcaccctggaccggacgggccaaga
ggaccaaagggaaatccaggtgaaccaggtccagaaggacaaccgggtcccaggggccgg
gaagggccgatgggccctcgaggagaaactggtccagctggtttgggacagaaaggagat
aaaggacctcagggtgagacgggtcgtcctggtcctgtcggttctcctggacctgtgggt
ccaaaaggtgctgcaggagagcatggagctcctggaaattcaggtgctcctggtctaaag
ggtgtccaaggtgaagctggaccctcaggaccaaaaggggaccgaggagctccaggggtg
ccaggaactaaaggagatcagggagaaagaggaccacgaggaccggcaggtgaacctgga
acatctggaccacagggtccgtcaggacccaagggatctaaaggaagtacaggtgaagcc
ggttccgttggacttcctggtgtgagaggacctccaggacttcctggtgatgttggtcct
ccaggttctcctgggctgcaaggacctccaggtgttgcaggaaatccaggacagccaggc
agcaaaggagaaccaggatcccccggtaaaatcatcggcccgattagttctgataccgtg
gccatccctggacctccgggaccagctgggcctccaggtcctgcaggacttcctggttta
tctggtcccatcggtcctgctggtgttccaggacaaccaggtccaaagggagattctggg
gagaaaggagataaaggagagcaaggaaaacgtggagagccaggggctggacctccaggt
ccatcaggacctccaggacttccagggcctccaggacaccctggacctcagggtcctcct
ggtgagagtaaacaaggtcctccaggccgccgaggacctcctggagagccaggtgttggt
gatcctggacctccaggcaagaagggagaacctggcagctttttgcccacatcagaaacc
ttctttgctggaccaccaggacctccaggacctctaggcccacagggtccaccaggtgac
caaggtccacaaggataccaaggtgaaccaggacaacctggtcttccaggaagtccagga
gaaccaggtgttggttttccaggacctccaggtccagaaggacctcaaggacctaaaggt
gatccaggaggtcctggaatcctgggagctgatcctgggagtatacatgttcctggccca
ccgggctcacctggtccacccggtccacctggaccacctggaagtgagtcagccagtgtg
ggtcagtacatcgcagactaccttcacagcgacggcatcaggcagtacctggctggacct
cctggacctcctgggcctccgggggaaccaggcttcttgagttcttcagaggacgggctc
gtggacaaagttgccagccgagtcattgcctacattcagagttcaggtccaggagctcct
ggtcctcctggtccacctggatccgtctctgtcaatgacatcatcaatctgctgcagcga
gaagatgtgagggcatacattacaggtcctcctggtccaccaggacctcctggaggtcca
ggttatggcggctacccctttaacacccaggatattgcagaacgtgtctacagtctcatg
aaggacaggggagtgttgggctcccctggacctccaggaccccctggacctcctggaaac
ttgttagcaactgggtttcagtctcttgttggccccccgggaccacctggtactcctggt
gctcctgggccacaaggcccacctggaccacctggaactccaggatttgggagctatgtc
agctcagatatgcgtgactacctgcaaagtgtttccttaacgggccccccaggcccccca
gggccccctggacctgagggcccccccggtcccatcggacaaacggtctcgtttacggac
ctgaccgccggagagaagctgaaggctgagcgacaagaatacgtccgcagtgttgatggt
ctgagaggagccatgtttggacttcctggtccaccaggtcctccaggacccccaggacac
aagggagagcctggcagcagggaggcgagccctgatgccgccaactactccatcatggtt
aaaaaagtaactgattacatcaaaacccacggtgtcctggaggacatcctccgaggacct
ccaggaccacccgggcctccaggtcctgcaggatacggcagatggtccggtttccatgga
aacaccacggatctgatggaactcatcagaactctgcagcacgacgtggaacagaaccag
aaccagaaccagggccccccgggaccacctggacctccaggccctccaggagagagccgg
ctgtttggttcccacacaaacatcagtgacatgatggactacatcaaaactcacggagcc
atcgtgggaccgcctgggagacccggactgaaaggggacacgggacgtccaggactgaaa
ggagcaaaaggtgaacgaggccttcctggagctcagggacacacaggacccaaaggagac
ttctcactgatgacggcaaagaggaggaggagcgccggattggaggtctga
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