Kryptolebias marmoratus (mangrove rivulus): 108251458
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Entry
108251458 CDS
T05608
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kmr03009
]
108251458 (ddx55)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108251458 (ddx55)
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108251458 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SLFN-g3_helicase
SBF_like
HMUDK_HMUD1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108251458
NCBI-ProteinID:
XP_017297265
UniProt:
A0A3Q3BIR7
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All DBs
Position
LG14:3249131..3269191
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AA seq
591 aa
AA seq
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MDNTTDGTWDSLSVQLNENILQTLSELKFIHMTPVQSACIPLFLSNKDVAAEAVTGSGKT
LAFVIPVIELLLKREEQLKKKQVGALVITPTRELALQISEVLERFLQKFPQFTQILLIGG
SNPVEDVEKFKDKGGNIVIATPGRLEDMFRRKSEGLDLASAVRSLDVLVLDEADRLLDMG
FEASLNNILSYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGQAAASTQKTPS
RLSNYYTICRSEDKFNNLVAFLRQHKHEKHLVFFSTCACVEYYGQALKMLVKKVIIHCIH
GKMNNKRNSIFANFRSLKSGILVCTDVMARGIDIPDVNWVLQYDPPTSASAFVHRCGRTA
RIGNYGNALVFLLPMEEVYINFLSINQKCPLQKMPPVKDVVDVLSKVKAMALADRAVFEK
GMKAFVSYVQAYAKHECSLIFRVKDLDFASLARGFALLRLPKMPELRGKSFPDFTETEVD
TDSIRYKDKNREKQRKKMLAELKEKDQADLPKKRFIKNKAWSKQKSKKERRKKQASKRKH
DEGSDVDDGDMKDLLADTRLLKKLKKGQISEEDFEQQIISVPKLKYRTEGP
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggataacacgacagatgggacgtgggacagtttatctgtccaacttaacgagaacatt
ttacaaacgcttagtgaattgaaattcattcacatgactcctgttcagtctgcttgtatt
ccgctgttcttgagcaacaaagatgtggctgccgaagcggtgacaggaagtgggaaaaca
ttggcttttgttattcctgttatagaactgctcttaaagagagaagaacaactaaaaaag
aagcaggttggcgctctggtgattactcctacaagagaactggctttgcagatcagtgaa
gtgttggaaaggtttcttcagaagtttccgcagtttacgcagattttattaattggtggc
agtaacccagtggaggatgtagagaagttcaaggataagggggggaatattgtgattgcc
acacctggccgtttggaggacatgtttaggaggaagtcagagggtctggacttggccagt
gcagtccggagtctggatgttctggttcttgatgaggctgacagactgcttgacatgggc
tttgaggccagtctgaacaacatcctgagctacctgcccaaacagagacgtactggcttg
ttttcagccactcagacccaggaactggagaagctggtgagggccggcctcaggaaccct
gtgagaatcactgtcaaggagaagggccaggctgctgcttccacccaaaaaactccctcc
aggctctctaattactacactatctgtagatcagaggacaagttcaacaacctggtggca
tttctaaggcagcacaaacatgagaaacatctggttttcttcagtacctgtgcctgtgtg
gaatactatggtcaagctctgaagatgttggtcaagaaggtcatcatccactgcattcac
ggcaagatgaataataagcgcaacagtatctttgccaactttcggagcctaaagagtggg
attctggtttgtacggacgtcatggccagaggcatagacattcctgatgtaaactgggtg
ctgcagtatgatccccccactagtgccagtgcctttgtacatcgatgtgggcgaacagcg
cgtattggaaactatggcaacgccctcgtctttctgcttccaatggaggaagtttacatc
aatttcttgtccatcaaccaaaaatgtccacttcagaagatgccgcctgtaaaagacgtg
gtagacgtcttgtccaaagtaaaggccatggccctagctgaccgggcggtgtttgagaaa
ggcatgaaggcctttgtttcatacgtccaggcctacgccaaacacgagtgcagcctcatc
ttcagagttaaagatctggactttgcctctctggcccgcggctttgcgcttctccgccta
ccaaagatgccagagctgcgaggtaaatcatttcctgacttcacagagacagaggtggac
actgacagcatccgctacaaggacaagaatagggagaaacagagaaaaaagatgctagct
gagctgaaagaaaaagaccaggctgatcttcctaaaaagagattcataaagaataaggcc
tggtctaaacagaagagcaagaaggagcggcgaaaaaaacaggcatccaagaggaaacac
gatgagggctccgatgttgatgatggagacatgaaagaccttttagctgacactcgcctc
ctcaagaaactaaagaaaggccaaatcagcgaggaagactttgagcaacagataataagt
gtcccaaagttaaaatacagaacagaaggaccataa
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