Kryptolebias marmoratus (mangrove rivulus): 108251592
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Entry
108251592 CDS
T05608
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108251592 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108251592 (sf3b3)
03041 Spliceosome [BR:
kmr03041
]
108251592 (sf3b3)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108251592 (sf3b3)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108251592 (sf3b3)
Spliceosome [BR:
kmr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108251592 (sf3b3)
Complex B
108251592 (sf3b3)
Complex C
U2 SnRNP specific factors
108251592 (sf3b3)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108251592 (sf3b3)
TFTC complex
108251592 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
108251592
NCBI-ProteinID:
XP_017297432
LinkDB
All DBs
Position
LG11:complement(26316575..26331924)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNQFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVAAAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGLEKQDELGDKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVLIETDHNSYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASLVRLINPIQGSTLDQVQLEQNEAAFSVAVCRFTNSG
DDWYVLVGVARDMILNPRSVSGGFIYTYRLGGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIISDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacatcaccctgcagcgggccaccggcatcagccacgccatccatgga
aacttctcaggaaccaagatgcaggagattgtcgtttccaggggaaagatcctggagttg
ctgcgtcccgatgccaacacagggaaggtgcacactcttctgaccatggaggtgtttggc
atcatcagatccctgatggcgttcaggctcaccggaggaactaaagattacattgttgtg
ggaagtgacagcggtcggatcgtcattctggagtatcatccatctaagaaccagtttgag
aaggtccaccaggagacatttgggaagagcggctgccggcgcatcgttcccgggcagttc
ctggccgtcgacccaaaaggccgagctgtgatgatcggagcgatagagaagcagaagctg
gtttatattctgaacagagatgctgctgccaggctgaccatctcctctcctctggaagcc
cacaaagcaaacacactcgtctatcatgtggtgggagtcgatgtgggctttgaaaatcca
atgtttgcctgcttagaaatggattacgaggaagcggacaatgacccaacaggagaagca
gctgcaaacactcagcagactctcaccttctatgagctggacctgggcttgaaccacgtg
gtccgaaagtacagcgaagctttggaggaacatggaaacttcctcattactgtacctggt
ggttctgatgggcccagtggagttctgatctgctctgagaactacatcacctacaagaac
tttggagaccagcctgacattcgctgccccatcccccgccgcaggaacgacctggatgac
ccggagcgaggcatgatatttgtctgctctgccacccacaaaaccaagtccatgttcttt
ttcctggctcagaccgagcagggagacatctttaaggtcactctggagacggatgaagaa
atggtgacagaaatcaggctgaagtacttcgacaccatccctgtggcagcagccatgtgc
gtcctgaagacgggcttcctgtttgtgtcctcagagtttgggaatcattacctttaccaa
atcgctcatttgggagatgacgatgaggagcccgagttctcctctgccatgccgttggaa
gagggcgacaccttcttctttcagcctcgacccttgaagaacttggttctggtggacgag
caggagaacttgtcaccgatcatgtcctgccagatcgctgatttggccaacgaagacacg
cctcagctgtacgtagcctgtggacgaggaccgaggtccaccctgagggtcctccggcac
gggctggaggtgtcagagatggccgtgtccgagctgcccggtaaccccaacgccgtgtgg
accgtccggagacacgtggaagatgagtttgacgcctacatcatcgtgtctttcgtcaac
gccaccctggtcctgtccatcggagagaccgtggaggaagtgacggattctgggtttctg
ggaacgactcccaccctctcctgctccctgctgggtgaagatgccctcgttcaggtttac
ccggacggcatccgtcacatccgagcagacaagcgtgtgaacgagtggaaaactccgggt
aagaagacgatcgtgcgctgtgccgtgaaccagcggcaggtggtcatcgcgctgacggga
ggagagctggtctacttcgagatggacccgtccggacagctgaacgagtacacggagagg
aaggagatgtctgcagacgtggtctgtatgagtctcgccaacgtccctcctggtgagcag
cgctctcgcttcctggctgtcgggctggtggacaacacagtccggatcatctccctggac
ccttcggactgcctgcagcctctgagcatgcaggctcttcctgctcagcctgaaagtctg
tgtatcgtagagatgggagggctggagaaacaggacgagctcggagataaagggaccatc
ggcttcctctacctcaacatcggcctgcagaacggtgtgctgctgaggaccgtcctggac
cctgtgaccggcgacctgtccgacaccagaacccgctacctggggtcccgaccggtcaaa
ctcttcagggtccggatgcagggacaggaagctgtgctggcgatgtccagccgctcgtgg
ctcagctactcgtatcagtcgcgcttccatctgaccccgctctcctacgagactctggag
tacgcctcgggattcgcctcagagcagtgccctgaaggcatcgtggccatctccaccaac
acgctgaggattttggctttggagaaactgggggccgtctttaaccaggtggcctttcct
ctgcagtacacccccaggaagtttgtgattcacccagagaccaacaacctcgttctgatc
gagaccgaccacaactcctacaccgagaccaccaaagctcagagaaagcagcagatggct
gaggagatggtggaggctgcaggcgaggacgagcgagagctggctgcagagatggccgcg
gcgttcctcaatgaaaatctcccggaggccatttttggttctcctaaagccggagcgggt
cagtgggcctcgctggtgcgactgataaaccccatccagggctccactctggaccaggtg
cagctggagcagaacgaagctgcgttcagcgtcgctgtgtgtcgtttcaccaactcgggc
gatgattggtacgtcctggttggcgtcgccagagacatgattctgaacccgaggtcggtc
agcgggggcttcatctacacgtatcgcctcggcggcggaggagagaagctggagtttgtt
cataagacccccgtggaggacgtccctctggccatcgcccccttccagggacgcgtcctg
gtcggagtcgggaagctgctgagaatctacgacctcggcaagaagaagctgctgcgtaaa
tgtgagaacaagcacgttcccaacctggtgacggggatccacaccatcggccagcgggtc
atcatctccgacgttcaggagagtctcttctgggttcgttaccgccggaacgagaaccag
ctcatcatcttcgccgatgatacgtatccccgctgggtgacaacggcctgtctgctcgac
tacgacaccatggcttccgctgacaagttcggcaacatcagcatcgtgcgtcttcctccc
aacaccagtgatgatgtggatgaagaccccaccgggaacaaagccttatgggacagaggg
ctcctcaacggagcctcacagaaggcggaggtggtggtgaactatcatgtcggagagacg
gtgttgtctctgcagaagaccactctgatccccggaggctccgagtctctggtctacact
actctgtccgggggcatcggtatcctggtccccttcacttcacacgaggatcacgacttc
ttccagcacctggagatgcacatgcgctccgagttccctccgctgtgtggcagagaccat
ctcagcttcaggtcctactacttcccagtgaagaacgtgatcgatggagatctctgcgag
cagtttaacagcatggatccacacaaacagaaaagtgtggcggaggaactggaccggacg
ccaccggaggtctccaagaagctggaggacattcgtactcgctacgctttctaa
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