Kluyveromyces marxianus: KLMA_50041
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Entry
KLMA_50041 CDS
T05269
Symbol
DED1
Name
(RefSeq) ATP-dependent RNA helicase DED1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
kmx
Kluyveromyces marxianus
Brite
KEGG Orthology (KO) [BR:
kmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmx03019
]
KLMA_50041 (DED1)
03041 Spliceosome [BR:
kmx03041
]
KLMA_50041 (DED1)
03036 Chromosome and associated proteins [BR:
kmx03036
]
KLMA_50041 (DED1)
Enzymes [BR:
kmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLMA_50041 (DED1)
Messenger RNA biogenesis [BR:
kmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
KLMA_50041 (DED1)
mRNA cycle factors
Common to processing body (P body) and stress granule
KLMA_50041 (DED1)
Spliceosome [BR:
kmx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
KLMA_50041 (DED1)
Chromosome and associated proteins [BR:
kmx03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
KLMA_50041 (DED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
34716657
NCBI-ProteinID:
XP_022676514
LinkDB
All DBs
Position
5:87951..89834
Genome browser
AA seq
627 aa
AA seq
DB search
MSDIAENMSNLSVQDDNARSGSNTGGRRSYVPPHVRGQQRSGSGNYRGRSDNFGGSERGS
YFGGDDRRGGGYGRGGGRGSFNWGGSNWGGRGDSRNGGGYGGNNSSGRWIDGKHVPAQRN
ANLELELFGAAEDKSFQSSGINFDNYDDIPVEASGTDVPEPITEFTSPPLDPVLLENINL
ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSSSFSSGPAPTPENAGNS
YIKKVYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDQQIKQMRYGCNLL
VATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVENRQTLM
FSATFPSEIQHLASDFLKDYIFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLSADAD
GLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVA
ARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATAFFNRGNKNVAKDLVNLLS
EANQEVPSFLTTIMREASSGRGGGRGGSRGGYSRGSGTRDFRRGGASNGGGFSNGGGFGN
SSGGGWGNSSSNWGSSNNSSSSNSGWW
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatattgctgaaaatatgtctaatttgtcagtgcaagacgataacgctagatct
ggttctaataccggtggtagacgttcatacgttcctcctcatgtgagaggtcaacagaga
agcggtagcggtaactaccgtggtcgttctgacaacttcggtgggtcagaaagaggttca
tactttggtggtgatgacagaagaggtggtggatacggtagaggtggtggaagaggttca
ttcaactggggcggctctaactggggcggtagaggtgacagcagaaacggtggtggttac
ggtggtaacaactcttctggtagatggatcgatggtaagcacgttccagctcaaagaaat
gccaaccttgaactagagttgtttggtgcagccgaagacaagagtttccaatcatctggt
attaactttgacaactacgacgatatcccagtcgaagcatccggtaccgatgtcccagaa
ccaatcactgagttcacttctcctccattagacccagtgttgttggaaaatatcaacttg
gctagattcactaagccaactccggtccaaaagtactccgttccaatcgttgccaatggt
agagatttgatggcttgtgctcaaactggttccggtaagactggtggtttcttgttccca
gtcttgtcctcctctttctcctctggtccagctccaaccccagaaaatgcgggcaactct
tatatcaagaaggtttacccaaccgccgttattttggctccaactagagaattggctacc
caaatttacgatgaagccaagaagttcacttatagatcttgggtcaagcctatggttgtt
tacggtggtgccagtatcgatcaacagatcaagcaaatgagatacggttgtaacttgtta
gtcgccaccccaggtcgtttgactgatttgttggaacgtcgttacatctccttggccaac
gttaagtatttggttttagatgaagctgatagaatgttggatatgggtttcgaacctcaa
atcagaagaatcgtcgaaggttccgacatgccaagcgtcgaaaacagacaaacattaatg
ttttccgccactttcccaagtgaaattcaacacttggcctccgactttttgaaggattac
atcttcttgtctgtcggtagggtcggttctacttccgaaaacattactcaaaagattcta
tacgtcgaagactttgacaagaacgataccttgttggatttgctatctgctgatgccgat
ggtttgactttgattttcgtcgaaacaaagagagctgctgactccttgactgacttcttg
attatggaaggtttcaaggctactgctattcacggtgaccgtacccaaggtgaacgtgag
cgtgcattgtccgctttcaagactggtagagccactatcttggttgctactgctgtcgct
gccagaggtttggatattccaaacgttacccacgtcattaacttcgatttgccaaacgat
attgatgattatgtccacagaattggtagaactggtcgtgccggtaacaccggtgttgcc
actgcattcttcaaccgtggtaacaagaatgttgctaaggatttggtaaacttattgtcc
gaagccaaccaagaggttccttccttcttgaccactatcatgagagaagcttcttcaggt
agaggtggcggtagaggtggttccagaggtggttactcccgtggtagcggaactagagat
ttccgtcgtggtggtgcttccaacggtggtggcttcagcaatggcggtggcttcggtaac
agcagcggcggtggctggggcaactcttccagtaactggggttcttcaaacaactcttct
agttccaactctggttggtggtga
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