Kluyveromyces marxianus: KLMA_50057
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Entry
KLMA_50057 CDS
T05269
Symbol
MTR4
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
kmx
Kluyveromyces marxianus
Pathway
kmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLMA_50057 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmx03019
]
KLMA_50057 (MTR4)
03041 Spliceosome [BR:
kmx03041
]
KLMA_50057 (MTR4)
03009 Ribosome biogenesis [BR:
kmx03009
]
KLMA_50057 (MTR4)
03016 Transfer RNA biogenesis [BR:
kmx03016
]
KLMA_50057 (MTR4)
Enzymes [BR:
kmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLMA_50057 (MTR4)
Messenger RNA biogenesis [BR:
kmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
KLMA_50057 (MTR4)
Spliceosome [BR:
kmx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
KLMA_50057 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
KLMA_50057 (MTR4)
Ribosome biogenesis [BR:
kmx03009
]
Eukaryotic type
Pre-60S particles
Helicases
KLMA_50057 (MTR4)
Transfer RNA biogenesis [BR:
kmx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
KLMA_50057 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Death_3
AAA_22
YodE
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
34716673
NCBI-ProteinID:
XP_022676530
UniProt:
W0TD20
LinkDB
All DBs
Position
5:complement(122465..125674)
Genome browser
AA seq
1069 aa
AA seq
DB search
MSDSLFDVFGETPAEDLIPPEELATLHDEIPAEDKSAAKRSNEENEASDNEERSKKVKKG
MALIDDKKNKEVVVPVVADAFEKEASREVEASTGLGSAQTVQLESDGKVKLRHQVRHQVA
LPPNFDYKPIGDHIRTNEARTYPFTLDPFQDTAISCIDRSESVLVSAHTSAGKTVVAEYA
IAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS
MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAE
WICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQN
GDDVHTIGGRGKKGQSYKGGAAKGEAKGDIYKIVRMIWKKKYNPVIVFSFSKRDCEELAL
KMSKLDFNTEEEKDALTKIFKNAIELLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK
EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA
GRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFM
LEHSFFQFQNATSVPVMEKKVAELSNELQSIQIDDEATIKEYYEIRKTLDGYNEDIRTII
THPANSLAFLQPGRLIKVKIDGKHDYGWAAVVDFVKRTNKRNPTAVYSDHESYIVNVVVN
TMYADSPINLLKPFNPTFPEGIRPAEEGEKTISTIIPITLSSIHSIGNIRLFMPNDIKAE
SQQTAVGKTLREAVRRFPDGVPVVDPVKNMKIQDDDFLKLLKKVEVLEGRLYSNPLTNTL
RLKELYEKYTKKVAIEADIKNLKHKINEAQAVVQLDDLRRRKRVLRRLGFCTQSDIIELK
GRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLKPELAEPLK
AMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVFEWCKGASFTQICKMTDVYEGSL
IRMFKRLEEMIKELIDVSKTIGNTTLKEKMEAALNLIHRDIVSAGSLYL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcgttattcgatgtctttggcgagacacctgccgaagatctaatacctcca
gaggagcttgcaacacttcacgatgaaattccagctgaagataagtctgctgcaaaacgc
tcaaatgaagagaacgaagcaagtgataatgaggagcgtagtaaaaaagttaagaaggga
atggcattgattgatgataaaaagaataaagaagttgttgtcccagttgtagcggatgct
tttgaaaaggaggcttctcgtgaagtcgaagcgtctactgggcttggttcagctcaaact
gtccaattagaaagtgatggtaaagttaagttgagacatcaagttaggcatcaggttgcc
ttaccacctaatttcgactacaaacctattggtgaccacatcagaactaacgaagcgcgt
acttatcctttcacattagatcctttccaagatactgctatatcttgtattgatcgtagt
gaatcagttttagtttctgcccatacctctgctggtaagacagttgttgccgaatacgcc
attgctcaatctttgagagaaaagcaaagagttatctatacatctccaatcaaagctttg
tcaaatcaaaagtatagagaacttttagcagaatttggagacgttggtttaatgaccggt
gatattactatcaatcctgatgcaggttgtttagtcatgaccactgaaattttaagaagc
atgctttacagaggtagtgaagttatgagagaagtcgcttgggtgatatttgatgaagtg
cattatatgagagataaggaaagaggtgttgtttgggaagaaacaattattttattgcca
gataaggttcattatgttttcctatcagctactattcctaacgccatggaatttgcagaa
tggatttgtagaattcattctcaaccatgccatattgtttatacagatttccgtccaacg
ccattgcagcattatcttttcccagctcatggggacggtattcacctagttgtggatgaa
aagggtactttcagagaggaaaatttccaaaaagcgatggcttctattagtaaccaaaac
ggtgacgatgttcatactattggtggtagaggtaagaaaggccaatcatataaaggtggt
gcggcaaagggggaagccaagggcgatatttacaaaattgttagaatgatttggaaaaag
aagtacaatcctgttatcgtcttttccttcagtaagcgtgattgtgaagaattagctttg
aaaatgtcaaaactagactttaataccgaggaagagaaggatgcccttacaaagattttc
aagaacgcaattgaacttctaccggaaacggatagagaattgccccaaatcaagcatatt
ttgcccttgcttagaagaggtatcggtatccatcattcaggtcttctacctattttaaaa
gaagttattgaaattctcttccaagaaggttttttaaaggttctctttgctacagagaca
ttctctattgggctaaatatgcctgctaaaactgttgttttcacaagtgttagaaaatgg
gatggtcaacagttccgttgggtctccggtggtgaatatattcaaatgtctggtcgtgct
ggtcgtcgtggtttagatgatcgtggtattgttattatgatgattgatgagaagatggaa
ccacaagtcgcaaagggtatggttaagggacaagctgatagattggattctgcattccat
ctagggtataatatgattttgaacttaatgcgtgttgaaggtatctctccagaatttatg
ttagaacattctttctttcaattccagaatgcaacatctgttccagttatggagaagaaa
gttgctgaactatcaaatgagttacaatctattcagattgatgatgaagcaaccattaaa
gaatattacgaaattcgtaagacattggatggttacaatgaggatatccgtactattata
acacatcctgcaaattcattggcatttttacaacctggtagattaataaaggtaaagata
gatggtaagcatgattacggatgggctgctgtggttgatttcgttaaaagaacaaacaaa
cgtaatcccaccgcagtatattctgatcatgagtcttacatcgtcaatgtggtagtaaac
accatgtatgcggattctccaataaatttattaaaaccattcaatccaaccttcccggag
ggaatcagacccgcggaagagggcgaaaagactatatctacaatcattcctataacatta
tcttccattcactccattggaaatattagactatttatgccaaatgatattaaggcagaa
agccaacaaactgcagtgggtaaaacgttaagagaagctgtccgccgtttcccagatggt
gtaccagtcgtcgatccagttaaaaacatgaaaatacaagatgatgatttcttgaagctt
ctaaagaaggttgaagtattggaaggaaggctatattccaaccctttgacaaatacttta
agattaaaagaactctatgaaaaatatacaaagaaggttgctattgaagcggatatcaaa
aacttgaagcataagattaatgaggcacaagcggttgttcaattagatgatttacgtcgt
agaaagagagttttacgtcgtctgggattctgtactcaatcagatatcatagaattgaaa
ggtcgtgttgcttgtgaaatttcatctggtgatgaattgttgttaactgagttaattttc
aacggtaatttcaacgagctttcacctgcacaagctgctgctttactctcatgttttgca
ttccaagaacggtgtaaagaagctccaagattaaaacctgaacttgccgagccattgaag
gccatgagggaagtggccggtaaaatcgctaaaattataaaggactctaaaatcgaatta
gtagaaaaagaatatgtcgagagtttcagacatgaactaatggaagttgtttttgaatgg
tgtaaaggggcatctttcacccaaatttgtaaaatgactgatgtctatgaaggctctttg
attagaatgttcaagagattagaagaaatgatcaaggaactaatcgatgtgtctaaaaca
attggtaatacgactttaaaagaaaaaatggaagctgctctaaacttaatccatagagat
attgtctcggcagggtcattgtatctataa
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