Kluyveromyces marxianus: KLMA_50322
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Entry
KLMA_50322 CDS
T05269
Symbol
CDC9
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
kmx
Kluyveromyces marxianus
Pathway
kmx03030
DNA replication
kmx03410
Base excision repair
kmx03420
Nucleotide excision repair
kmx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KLMA_50322 (CDC9)
03410 Base excision repair
KLMA_50322 (CDC9)
03420 Nucleotide excision repair
KLMA_50322 (CDC9)
03430 Mismatch repair
KLMA_50322 (CDC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kmx03032
]
KLMA_50322 (CDC9)
03400 DNA repair and recombination proteins [BR:
kmx03400
]
KLMA_50322 (CDC9)
Enzymes [BR:
kmx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KLMA_50322 (CDC9)
6.5.1.6 DNA ligase (ATP or NAD+)
KLMA_50322 (CDC9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
KLMA_50322 (CDC9)
DNA replication proteins [BR:
kmx03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
KLMA_50322 (CDC9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
KLMA_50322 (CDC9)
DNA repair and recombination proteins [BR:
kmx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
KLMA_50322 (CDC9)
NER (nucleotide excision repair)
Other NER factors
KLMA_50322 (CDC9)
MMR (mismatch excision repair)
Other MMR factors
KLMA_50322 (CDC9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
34716928
NCBI-ProteinID:
XP_022676786
UniProt:
W0TDU3
LinkDB
All DBs
Position
5:complement(688329..690473)
Genome browser
AA seq
714 aa
AA seq
DB search
MLRLALRLVNATSYRGGPRHVGRRSYSVSPVQMSVKRKQVTLDALFGGSKKVKPEAKPEV
KPEVKPEARLEDSNSKVKNSTPTPTPPGSSSNAAVVSNIPFAELCDTFQAIEETSSRLAI
TAICSKFLYSVLERDAKSLVPVTLLFIHKLGPDYEPGLELGLGESLLIKTISEACGKTTQ
QIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVFNNLVAIAKASGKDSQSKKSSLI
KKMLTACKGFEAKFLIRSLESKLRIGLAEKTVLIAVSKAILTHEHKGEEPSADMVERAES
LIRDAFCQIPNYEIIITTALEHGIMNLDQHIKLKPGIPLQPMLAKPTKSISEVLDRFQGT
RFTCEYKYDGERAQVHLLSDGTMRIYSRNGEDMTERYPEINVSDYIRKEGSAAGGESTAP
VVTSFILDSEAVAWDQEQNKILPFQVLSTRKRKGVELKDVKVRVCLFAFDILCLNDEPLI
NKSLSERRDILRATFDPTPGQFVFANEITTTNLDELQKYLDQSVKDSCEGLMVKMLDGEE
SHYEPSKRSRNWLKLKKDYLDGVGDSLDLVVLGAYYGRGKRTGTYGGFLLGCYNQDTEEF
ETCCKIGTGFSDEMLQTLYDRLQHTTVEHPSTNVIYDSSAPADVWFEPSMLFEVLTADLS
LSPVYKAGFEAYGKGISLRFPRFVRIRDDKGVTDATSSDQVIEFYESQASVRGQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgactagctttgagattggtcaacgctacgtcttatagaggaggtccacgccac
gtcggtagaagaagctattccgtatccccagttcagatgtccgtgaagcgcaaacaggtg
acattagatgccctctttggaggcagcaagaaggttaagccagaggccaaaccagaagtc
aagccagaagtcaagccagaggccaggctagaagattccaattccaaggttaagaattct
actcccactcctactcctcctggtagcagtagcaatgcagctgttgtctcgaacatccca
tttgcagagctatgcgatacgttccaggccatcgaggagacgtcatcgcgacttgccatc
actgcgatctgctccaagttcctctactcggtgttggaacgcgatgcaaagtcgttggtc
cccgtcacgctacttttcatccacaagttgggccccgattacgagccagggttggaattg
ggtcttggggagtcgttgttgatcaagaccatcagcgaagcgtgcggcaagacgacgcag
cagatccgcaacaagtaccgtgagattggtgacttgggtgaaatcgcgatgcaggcgcgt
aacgtgcagcctacgatgttcaagcccaagccattgacggttggggaagtgttcaacaac
ttggttgcgattgccaaggcaagcggcaaggattcgcagtccaagaagtcgtcgttgatc
aagaagatgttgactgcgtgcaaggggttcgaggccaagtttctaatccggtcgttagag
tcgaagctcagaatcgggttggccgaaaagactgtcttaattgcagtgagcaaagcgatt
ctaacgcacgagcacaagggcgaggagcccagcgccgatatggttgagcgtgccgaatcc
ttgatccgggacgcgttctgccagattcccaactacgagataatcattaccactgcgttg
gagcacgggatcatgaacctcgaccagcacatcaagttgaaaccggggattcccttgcaa
ccgatgttggcgaagcccacgaaatcgatcagcgaggtgctcgaccggttccagggcacg
cggttcacgtgtgagtacaagtacgacggggagagagcccaggtgcacctgctgagcgac
ggcacgatgcgcatctactcgcgtaacggtgaagacatgaccgagaggtaccccgagatc
aacgtgagcgattacattaggaaggagggcagcgccgccggaggtgagtctacggcccct
gtcgtcacatccttcatcctcgacagcgaagctgtcgcctgggaccaggagcagaacaag
atcttgcccttccaggtgctcagcacaagaaagcgcaagggcgtcgaattgaaagacgtc
aaggtccgcgtgtgcttgttcgccttcgacatcctctgcctaaacgacgaaccgctcatc
aacaagtctctctcggaaagacgcgacatcctacgcgcaaccttcgacccaacaccgggc
caattcgtcttcgcaaacgaaatcaccaccacaaaccttgacgaattgcaaaagtacttg
gaccaatccgtcaaggactcgtgcgagggcctcatggtcaaaatgctcgacggcgaggag
tcccactacgagcccagcaagcgttccagaaactggttgaagctcaagaaagactacttg
gacggtgtcggcgactcgctcgaccttgtcgtccttggggcctactacggacgcgggaaa
cgtaccggaacctacggtggcttcctcttgggctgctacaaccaggataccgaggaattc
gagacctgctgcaagattggtaccggtttcagcgacgaaatgctacaaacgctatacgac
agactacaacacactactgtcgaacacccgagtaccaatgttatatacgactcgtctgct
ccagcagacgtgtggttcgagcccagcatgcttttcgaggtgctgactgcggatttatcg
ctctcacccgtttacaaggccgggttcgaggcatacggcaagggtatatcgctcagattc
ccaaggtttgtccgaatcagagatgacaagggtgtcacagacgcgacttcttcggaccag
gtcattgagttttacgagtcgcaggccagcgtgagggggcaatag
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