Kitasatospora hibisci: ACF9IK_11350
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Entry
ACF9IK_11350 CDS
T11051
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
knb Kitasatospora hibisci
Brite
KEGG Orthology (KO) [BR:
knb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
knb03016
]
ACF9IK_11350
Enzymes [BR:
knb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACF9IK_11350
Transfer RNA biogenesis [BR:
knb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACF9IK_11350
Prokaryotic type
tRNA splicing ligases
ACF9IK_11350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XIJ53382
LinkDB
All DBs
Position
complement(2657307..2658500)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYTEVPGIRVPIRMWTDPATVEGQAMQQLRNISSLPWLHGLAVMPDVHLGKGATVGSVI
AMKGAVCPAAVGVDIGCGMSAVKTSLTAKDLPDDLSRLRSKIEQAIPVGRGLHTDPVDPR
KLHGFATAGWDDFWQRFDGVAPEVKWRRERAMQQMGTLGSGNHFSELCIDDTGSVWLMLH
SGSRNIGKELAEHHMGVARSLPHNQGLVDRDLAVFISDTPQMAAYRQDLFWAQEYAKNNR
AVMMALFQDVVRREFAKARVAFDEVISCHHNYVAEEQYDGVDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEAAFNSASHGAGRKMSRSAAKKRFTTQDLVEQTKGVECRKDSG
VVDEIPGAYKSIEKVIEQQKDLVEIVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaggtgcccggcatccgggtcccgatccggatgtggaccgacccggcc
accgtcgagggccaggccatgcagcagctgcgcaacatcagctcgctgccctggctgcac
ggcctcgccgtgatgccggacgtccacctgggcaagggcgcgaccgtcggctccgtgatc
gcgatgaagggtgccgtctgcccggcggcggtcggcgtggacatcggctgcgggatgagt
gcggtgaagacctcgctgaccgcgaaggacctgccggacgacctgtcccgcctccgctcc
aagatcgagcaggccatcccggtcggccgcggtctccacaccgacccggtcgacccgcgc
aagctgcacggcttcgcgacggcgggctgggacgacttctggcagcgcttcgacggggtg
gccccggaggtcaagtggcgccgcgaacgggccatgcagcagatgggaacgctcggaagt
ggaaaccacttctcggagttgtgcattgatgacaccggttctgtctggttgatgctgcat
tccggatcgcgcaacatcggtaaggagctggccgagcaccacatgggggtggcgcgctca
cttccgcacaaccagggcttggtcgaccgtgatctcgcggtgttcatttcggacaccccg
cagatggcggcctaccgtcaggacctcttctgggcgcaggagtacgccaagaacaaccgc
gcggtgatgatggcactgttccaggacgtcgtccgccgagagttcgccaaggcgagggtc
gccttcgacgaggtcatcagctgccaccacaactacgtggcggaggagcagtacgacggc
gtcgacctgctggtgacccgcaagggcgcgatcagggctggctccggcgactacgggatc
atccccggctcgatggggacgggttcgtacatcgtccgcggcctcggaaacgaggcggcg
ttcaactcggcctcgcacggtgccggccggaagatgagccgcagcgcggcgaagaagcgg
ttcaccactcaggacctggtcgagcagaccaagggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccgggtgcctacaagtccatcgagaaggtcatcgagcagcagaag
gacctggtcgagatcgtggcccacctgaagcaggtcgtctgcgtcaagggctga
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