Kwoniella newhampshirensis: 92178688
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Entry
92178688 CDS
T10314
Symbol
IAR55_001429
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
kne Kwoniella newhampshirensis
Pathway
kne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92178688 (IAR55_001429)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kne03019
]
92178688 (IAR55_001429)
Messenger RNA biogenesis [BR:
kne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
92178688 (IAR55_001429)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
92178688 (IAR55_001429)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
DUF5949
Motif
Other DBs
NCBI-GeneID:
92178688
NCBI-ProteinID:
XP_066804479
UniProt:
A0AAW0Z243
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All DBs
Position
3:213608..214989
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AA seq
334 aa
AA seq
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MFSVTSIPPSSTLSFADDIPSSHRKHPAELDAMDVDEVGFEDEYGGAGPSKRTIVTPGEI
ITSSKEYMRGHGTYVEDVNVVSSVTGTIDRVNKLISVKPLRSRYNPEVGDLVIGRINEVG
PQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVAEVQSLLGDG
VMSLHTRSLKYGKLRNGFLITVPPQLIRRLKSHFHHIPPPCGPTGVDIILGLNGFVWVSS
GTSQERREGGEGFDAEGVYSDRNDDITPEGRQAISLIANLIKLLAREGVPLTETLIGEAY
TWAAKNGLGIGTLNEEVEERLLSEVVGLDITKSS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcgtcacctccataccgccgtcttcaaccttatcattcgccgatgatattccc
tcttcccatcgaaagcatcccgctgagctcgatgccatggacgttgatgaggttggattc
gaggatgaatatggaggtgcaggacctagcaaaaggacgatagtcacacctggagaaatc
atcacaagctccaaggagtacatgagaggacacggtacatatgtggaagatgtcaatgtg
gtgtcttccgtgactggtacgatcgatagagtcaataaactcatttcagtcaaaccttta
cgatcacggtacaatccagaagtcggtgacctggtcatcggtcgaatcaacgaagttggt
ccccaaagatggcgtgtcgatgcgaatggtcgtcaagatgcggtcttgatgctgtcaagt
gtcaatctgccaggcggtgtacagagaagaaagatcgagtcggacgccttgaaaatgagg
gagtttttggctgagggcgatttgctcgtcgctgaagtgcaatccttactcggcgatggt
gtcatgtcgttacatactcgatcattgaagtacgggaagctacgaaatggcttcctcatt
actgttcctccacaactcatccgtcgactcaaatcgcattttcatcacatcccacctcct
tgtggtcccaccggtgtagacatcatcttaggactgaacggtttcgtctgggtcagtagc
ggtacctcacaagaacgaagagagggtggagaaggatttgatgcggagggtgtatacagt
gatagaaacgatgatatcacaccagaaggaagacaagccatctcactgattgcgaacctg
atcaagcttctcgcgagggaaggtgtccctctcaccgagactctgataggggaggcgtat
acgtgggctgcgaagaacggactggggattggtaccctgaatgaggaagtcgaggagaga
ctactatcggaggtcgtgggcttggatattacgaaaagctcatag
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