KEGG   Kwoniella newhampshirensis: 92178698
Entry
92178698          CDS       T10314                                 
Symbol
IAR55_001439
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
kne  Kwoniella newhampshirensis
Pathway
kne03018  RNA degradation
kne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:kne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    92178698 (IAR55_001439)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    92178698 (IAR55_001439)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kne03019]
    92178698 (IAR55_001439)
   03041 Spliceosome [BR:kne03041]
    92178698 (IAR55_001439)
Messenger RNA biogenesis [BR:kne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     92178698 (IAR55_001439)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     92178698 (IAR55_001439)
Spliceosome [BR:kne03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    92178698 (IAR55_001439)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 92178698
NCBI-ProteinID: XP_066804489
LinkDB
Position
3:complement(<237828..>238617)
AA seq 84 aa
MASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTPAGITET
ELGQTLLNGNNIAMLIPGGQGPRA
NT seq 255 nt   +upstreamnt  +downstreamnt
atggcaagcactatcctccccctcgagctggtggacagatgtatcggatcaccgatctgg
gtgttgatgaagaacgagagggaattcacggggactttgatgggcttcgacgactatgtc
aatatggtcttgaaagacgtcaaggagtacgaagtcacgcctgctggaatcaccgagaca
gaactgggtcaaacgttattgaatggtaataacattgcgatgttgatacccggtggtcaa
ggtcctagagcgtga

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