Kwoniella newhampshirensis: 92180780
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Entry
92180780 CDS
T10314
Symbol
IAR55_003522
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
kne Kwoniella newhampshirensis
Pathway
kne03008
Ribosome biogenesis in eukaryotes
kne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kne00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
92180780 (IAR55_003522)
09123 Folding, sorting and degradation
03018 RNA degradation
92180780 (IAR55_003522)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kne03019
]
92180780 (IAR55_003522)
03009 Ribosome biogenesis [BR:
kne03009
]
92180780 (IAR55_003522)
03016 Transfer RNA biogenesis [BR:
kne03016
]
92180780 (IAR55_003522)
03036 Chromosome and associated proteins [BR:
kne03036
]
92180780 (IAR55_003522)
Messenger RNA biogenesis [BR:
kne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
92180780 (IAR55_003522)
mRNA degradation factors
5'-3' decay
5' exonucleases
92180780 (IAR55_003522)
Ribosome biogenesis [BR:
kne03009
]
Eukaryotic type
Pre-60S particles
RNases
92180780 (IAR55_003522)
Transfer RNA biogenesis [BR:
kne03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
92180780 (IAR55_003522)
Chromosome and associated proteins [BR:
kne03036
]
Eukaryotic type
Gene silencing
piRNA pathway
92180780 (IAR55_003522)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
DUF5601
Motif
Other DBs
NCBI-GeneID:
92180780
NCBI-ProteinID:
XP_066803021
UniProt:
A0AAW0YYZ0
LinkDB
All DBs
Position
6:complement(967769..973231)
Genome browser
AA seq
1423 aa
AA seq
DB search
MGIPKFFRWISERYPLTSQLITPNSIPTFDNLYLDMNGIIHNCSHPPSSENDPHFRITEE
QMVLAIFAYIDHLFTKIKPQKVFFMAIDGVAPRAKMNQQRSRRFRTAKDAKERRQEAEKK
GEKLPEEKAFDSNCITPGTPFMARLSAHLKYYVSKRISEDAEWRNVKVILSGHDVPGEGE
HKIQEFIRLTKAQPDYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRKSKKTT
GLANTNFFLLHLSLLREYLDLEFSSLAAQIPFEYDLERIIDDFILMAVFVGNDFLPHLPD
LHINEGALERIWGIYKEILPEAGGYLNEHGTISLPRLQLMLNKLAQFEVDNFEAEYADQN
WYKGKQQKEIEAMEKARKKGKLVITKDQQKILDQIRKFVTKHQAKPTSDDHCTIVNDLSA
RDRRFVQELADELHLHTTWDEVDDYGQPIVSLSFNMEGVSEGGSEADGEEGEEEWESEEE
GEQSEGDLAIQRVLQKYNKAKVVDNIVEDFEEAYEDKLKENMDEWKKRYYKEKLEINYND
PEDMHALAYRYIEGLQWILNYYYKGVSSWGWFYNYHYAPRITDLKGIADYKFDFDIGKPF
TPYQQLMGVLPEESREHVPLAYRDLMYEDSSPIIDFYPQDFELDMNGKKQDWEAVIKIPF
IDQDRLLRAMASRDVRLTEEERRRNRGNVLSTQFVYDENAEGNYPSSLPGFFPELAGCKC
KGSPFELPKLGDGIDLILGLLDGVHLGASALAGFPSLQTLPHQGTLGYHGVSVFQSESRN
QSMIITVTAKHDRGNTSDIAKNVIGQRTFHSWPYLHEGMIVAVSDDMFKYELQQVGKAAK
VVGTPHNPFQAISWKKSADHIEHHNSKRFGVIIGNVDVVLHVRPLKGLKRLDTGALVKDY
EAPEKEITQALQLAVNQVTFEDERYLEQDAPPMAHEFPEGERVIFLGQLAYGTAAQVLGT
TEKTLDVGLAFFPTESKENVHFSQLVAHRPAGQYYPSPVLSRRLGISALALSRITSSLLV
MLEDGSKTNIGLSLKFESKGLKVLGYSRRNDRGWEFSEKTAQALMEYKMAFPEPFHNLDS
RGGDIVKSAELCPTAEDPDKIVKDMKKWLKSHDLLDLEPVSLFAEQLEKESVQLIEQLAD
QFRANKSHDQIKRAVVKGIPRQAVLKPSHAIYRLQGQKFIVGDRVIMVQDAAAGGVPLAM
KGVVVGLGTRDIDVVWDVPFMGGETLQGRCSEYRGSTVPFSACLNLTRPQFAVGFDTKPK
STGQAEPFKPQLGPRPVLPMQNFQPAVPGKKPVQAPTGIMRNPARAPAPTDRQLQYGNAA
KGVKPPLMAQQQQQGNHRDQLASVLGANKHVAHRPGHGVIPPALIKSPPQGAPRILGTGE
IAPPQQQGHVHNGASTRGGGRGRGRGAARGRGRGRGGVQVTTS
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgggtattccaaagttcttcaggtggatctcggagaggtatcctcttacttcccagttg
atcacgccgaattcgatcccaacgttcgacaatctttacttggatatgaatggtatcatc
cacaactgttctcaccctccttcatccgagaatgatcctcatttccggataactgaagaa
cagatggtcctagcgatattcgcttatatagaccatctcttcaccaagatcaaaccgcag
aaggtctttttcatggccattgacggtgtagcaccaagagcaaagatgaaccagcagaga
agcagacggttcaggaccgctaaagatgccaaagagaggaggcaagaggccgaaaagaag
ggggagaaattgccagaggagaaagcattcgattcgaattgtatcacaccaggaaccccc
ttcatggcgaggttgtccgcacacttgaaatactatgtcagcaaaaggatctcagaggac
gccgaatggagaaacgtcaaggtcattctgagtggacacgatgtgcccggagagggcgag
cacaaaattcaagagtttatccgactcacaaaagctcagccggattacaatcccaacacc
agacattgcttgtacggccttgatgccgatctgatcatgctagggttattaagtcatgat
ccccacttctgtctcttacgagaggaagtcacttttggacgaaaatcgaagaagactact
ggtcttgccaataccaactttttcttacttcacttatcacttttacgagaatatcttgat
cttgaattctcgtcgctggcggcgcagatcccctttgagtacgatcttgaacgaatcatt
gatgacttcatcctcatggcggtgttcgttggaaacgatttcttgccacatcttcctgac
ttgcacatcaacgagggtgctctggagcgtatctggggcatctacaaggagatattgccg
gaagctggcggatatctgaatgagcacggaacgatttcgttgcctcgactccagcttatg
ctgaacaaattggctcaatttgaggtcgacaatttcgaagcggaatatgctgaccagaac
tggtataagggaaaacagcagaaggaaattgaagcgatggagaaagcgagaaagaaggga
aagttagtcattacgaaggatcagcagaaaattcttgatcagattcgcaaatttgtgacg
aagcatcaagcaaaaccgacttccgacgatcattgcaccattgtcaatgacctttcggct
cgtgacaggcgattcgtgcaagagctcgctgacgagttgcatctgcacacgacatgggac
gaggttgacgattacggtcagcccattgtctcactctccttcaacatggagggcgttagt
gagggtggaagcgaggcagacggcgaggagggcgaagaggagtgggaatctgaggaagaa
ggcgaacagtctgaaggcgatctcgcaattcagcgggtcttgcagaaatacaataaagct
aaagtcgtcgacaacatcgttgaggatttcgaggaagcctacgaggataaactaaaggag
aacatggacgagtggaagaaaagatactacaaagagaaactagagatcaattacaacgat
cccgaagacatgcacgcccttgcttatcgctacattgagggattgcagtggatcttgaat
tattactacaagggtgtctccagttggggatggttctacaactatcactatgcgcctcga
atcaccgacctcaagggcatagcggattataaattcgactttgacattggaaagcctttc
acgccctaccaacagcttatgggtgtgttacccgaggagagtagggaacacgttccactc
gcttacagagacttgatgtatgaggactcatcacccatcatcgacttctacccgcaagac
ttcgagctagacatgaacgggaagaagcaagactgggaggctgttatcaaaattcctttc
attgatcaagacagactccttcgtgctatggcttctcgcgacgttcgtctgactgaggaa
gagagaagacgcaatcgaggaaacgtcctgagcacccagttcgtatacgacgaaaatgcc
gaggggaactacccatcttctttgcccgggttcttccctgagcttgccggctgcaagtgc
aaggggtcaccattcgagcttcccaagcttggcgacggcatcgatttgattctcggtctc
cttgatggtgtacaccttggcgcttccgctttggccggcttcccgtccttgcaaactctc
cctcatcagggtactcttggctaccacggtgtgagcgtcttccagtccgaaagccgcaac
cagtctatgatcatcactgttacggccaaacatgatcgaggaaacaccagtgacatcgcg
aagaatgtcatcggccaacgaacatttcactcctggccttatcttcacgaaggcatgatt
gttgctgtatcggatgatatgttcaaatatgagctacagcaagtcggcaaggctgcgaag
gttgttgggacaccccataaccccttccaagcgatctcatggaagaagtcagcggaccac
attgaacatcacaactccaagagattcggagtcatcattggcaatgtggatgtcgtcctg
catgtcagacctctcaagggtcttaaacggctggacacaggcgcgctcgtcaaagattac
gaagcacccgagaaggaaattacccaagccttgcaacttgccgtgaaccaggtcaccttt
gaggacgagcgttaccttgaacaagacgctcctcctatggctcatgagttcccggaaggc
gaaagggtcatcttcctcggtcaactcgcctatggaactgctgctcaggtcctcggcact
acggagaagaccctagatgttggattagctttcttcccaactgaatccaaagagaatgtc
catttctcgcaacttgttgctcatcgacctgcggggcagtattacccttcgccagtgcta
tcgcgtcgactaggcatctctgccctggcactatcgcgaatcacttcctcacttttggtg
atgcttgaggatggttcgaagaccaatatcggtctttctcttaagtttgaatcgaagggt
ctcaaggtattgggctactctcggaggaacgaccgcggttgggagttctcggagaagacc
gcccaggctttgatggagtacaagatggctttccccgagccgttccacaatcttgactcg
cgtggtggtgacatcgtcaagtccgctgagctttgcccgactgccgaggaccctgataag
attgtcaaggacatgaagaagtggttaaaatcgcacgaccttctagatctagagccagtc
tcccttttcgctgagcaacttgaaaaggaatctgtccaattgatcgagcaactggcggac
cagttccgagcgaacaaatctcacgaccagatcaaacgcgctgttgtcaaaggtatccct
cgccaggcggtgctcaaaccatcacatgccatctaccgtcttcaaggtcagaagttcatc
gttggcgacagagttatcatggtccaagatgctgctgccggtggtgtgcccctcgccatg
aaaggtgtggtcgtgggtctgggcaccagggacatagatgtggtatgggatgtacccttc
atgggcggagagacacttcaggggagatgctcagagtatcgagggtcaactgtcccattc
tctgcgtgtctcaaccttacgcgacctcagtttgcggtaggttttgacaccaaacccaag
tcgaccggccaagcagagccattcaaacctcaactgggaccacgaccagtgttacccatg
cagaacttccagccggcggtccctgggaaaaagcccgttcaggctccaacagggatcatg
cgcaaccctgcacgggcgcccgcccccacggaccgacagctgcagtatggcaatgcggca
aagggcgtcaagcctcctcttatggctcagcagcagcaacaaggcaatcaccgagaccaa
ctcgcttcagtcttgggcgccaacaaacacgtcgctcatcgacctggtcacggcgtgatt
cctcctgcccttatcaaaagtcctccccagggtgcaccacggatcttagggactggagag
attgcacctcctcagcagcagggtcatgtgcataacggggcatcgacgaggggtggtggc
cgtggccgaggaagaggtgcggcaagaggaaggggacgtggacgaggtggagttcaggtc
acgacgagttag
DBGET
integrated database retrieval system
