Kwoniella newhampshirensis: 92181535
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Entry
92181535 CDS
T10314
Symbol
IAR55_004277
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kne Kwoniella newhampshirensis
Pathway
kne03013
Nucleocytoplasmic transport
kne03015
mRNA surveillance pathway
kne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
92181535 (IAR55_004277)
09122 Translation
03013 Nucleocytoplasmic transport
92181535 (IAR55_004277)
03015 mRNA surveillance pathway
92181535 (IAR55_004277)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kne03019
]
92181535 (IAR55_004277)
03041 Spliceosome [BR:
kne03041
]
92181535 (IAR55_004277)
Enzymes [BR:
kne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
92181535 (IAR55_004277)
Messenger RNA biogenesis [BR:
kne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
92181535 (IAR55_004277)
Spliceosome [BR:
kne03041
]
Complex C
Other components
EJC/TREX
92181535 (IAR55_004277)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
92181535 (IAR55_004277)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DNA_ligase_A_N
AAA_19
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
92181535
NCBI-ProteinID:
XP_066801790
UniProt:
A0AAW0YWR0
LinkDB
All DBs
Position
8:complement(159307..161586)
Genome browser
AA seq
430 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPATTTATNGEKADGDKKGSYVGIHSTGFRDFLLKPELLR
AISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVGIVI
LCHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRT
MALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIR
TTCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKS
VARATQLDALLQECNFPSICIHSALPQAERISRFQQFKAFEKRILVATDIFGRGIDVERV
NVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSDADSEVLQKIQERFTVAIPTLPE
TVDPATYMTS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacctgacgaagaagagctcgtcgactacgacgaggccgctgaggagaccttc
gcccccgccaccaccactgctaccaacggtgagaaggccgatggtgacaagaagggttca
tacgtcggtatccactccactggcttccgagacttccttttgaagcctgaattgcttcgt
gctatctctgacctcggttttgagcacccttccgaagtgcaacaagagtgtatcccccag
gctatcctcggtaccgacgttctttgtcaggccaagtctggtatgggtaagaccgcagta
ttcgtccttgcctgtttgcaacagatcgagcccgtcgatggcgaggtcggtattgtcatc
ctttgtcacacccgagagcttgcctaccagattagaaatgagtttgcccgtttctccaag
ttcatgaccaacgtccgaaccggtgtcttttacggtggtacacccatctccgccgaccag
gagattcttgcttccaaggagaaatgccctcatatcgttgtcggtactccgggtcgaaca
atggctctcgtcagggacaagaagctcaacgccagcaaggtcaagcacttcgttcttgac
gaatgtgacaagatgctcgaacaacttgacatgcgacgagacgttcaagagattttccga
gccaccccccaccacaagcaggttatgatgttctccgccaccctttcgaaggacatccga
accacctgcaagaaattcatgcaaagccctcttgagatctacgtcgatgacgagacaaag
ttgactctgcacggtcttcaacaatacttcctcaaacttgaggagaaggagaagaacagg
aagctcaacgacttgctggacaaccttgagttcaatcaggtgtgcatcttcgtcaaatcg
gtggctcgagccactcaactcgacgctttgctgcaagagtgtaacttcccttctatctgt
atccactcagctcttcctcaggcagagcgtatctctcgattccaacaattcaaggcattt
gagaagcgaattctcgttgctaccgacattttcggtcgaggtattgatgttgagcgagtc
aacgtcgtcatcaactacgacgcccccgctgatgccgattcttatctccaccgagtcggt
cgtgctggtcgattcggtaccaagggtctcgccatctctttcgtgtccagcgatgctgac
tctgaggtcttgcaaaagatccaagagcgattcactgttgccattcccaccttgcccgag
accgttgaccctgctacatacatgacttcgtag
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