Kwoniella newhampshirensis: 92183026
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Entry
92183026 CDS
T10314
Symbol
IAR55_005768
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
kne Kwoniella newhampshirensis
Pathway
kne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92183026 (IAR55_005768)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kne03019
]
92183026 (IAR55_005768)
03041 Spliceosome [BR:
kne03041
]
92183026 (IAR55_005768)
03009 Ribosome biogenesis [BR:
kne03009
]
92183026 (IAR55_005768)
03016 Transfer RNA biogenesis [BR:
kne03016
]
92183026 (IAR55_005768)
Enzymes [BR:
kne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
92183026 (IAR55_005768)
Messenger RNA biogenesis [BR:
kne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
92183026 (IAR55_005768)
Spliceosome [BR:
kne03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
92183026 (IAR55_005768)
Complex C
U4/U6.U5 tri-SnRNP related factors
92183026 (IAR55_005768)
Ribosome biogenesis [BR:
kne03009
]
Eukaryotic type
Pre-60S particles
Helicases
92183026 (IAR55_005768)
Transfer RNA biogenesis [BR:
kne03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
92183026 (IAR55_005768)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
CtIP_N
TraF
Motif
Other DBs
NCBI-GeneID:
92183026
NCBI-ProteinID:
XP_066800631
UniProt:
A0AAW0YYG2
LinkDB
All DBs
Position
12:507204..511032
Genome browser
AA seq
1085 aa
AA seq
DB search
MADLTPIDSSASAGPSTNGTPKVKKQRKRGAKESGTLTPDRPVKTPRMTEVDEDNDDPMD
ALDGANAPVDPMDAIVNASGPAVDPMEALDGETDAAMPVRADEFEQEAEREVDAAKGLDG
VTAEEGKMKLVHQVRHQVAVPPNFPYIPISQHKRLDPPARTYKFELDPFQFVSTSCIERN
ESVLVSAHTSAGKTVVAEFAIATCLKEGRRVVYTSPIKALSNQKYREFLETFGDVGLMTG
DVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLP
HTVRYVFLSATIPNSMEFAEWICATHEQPCHVVYTDFRPTPLQHYLFPAGSDGIYLVVDE
RSNFREDNFQKAMAALAAGQGEDSADPNSGKGRKGKTRKGGAMKGEKSDIYKIVTLIMRR
NLNPVIIFAFSKRECEDLAMQMQKFDFNTEDEAATVGQVFENAIGALSEDDRKLSQIEGI
LPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKF
DGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPDAAKGMVKGQADRLDSAFH
LGYNMIINLMRVEGVSPEYMLERCFFQFQNTMSVPVLEKQLKEAEAERDAIVVEKEDDIK
EYYELRQQLKEKGQDFQAVISHPTYSLRFLQAGRLVEIREGDKDFGWGVVVAYNKIVNPK
GRTPVWTEQDAPQMQYTVDVLTRIASGSSVPRDRSASGLVPPAKGDQGEVAIIACSLTTV
QAISQYRINLPKDLRGQGEKNTAFKAVGEIKKRMPEGPPLLDPIKSMGIEDKSFKDLVKK
IAILEDRLQSLPITKSADLPRLYDLFDRKQQMIESVKALKRKINSVHDILQLEELKSRKR
VLRRLGFTSSDDVVEMKGRVACEISTGDELMLTEMMFGGTFGTLTPEQCAALLSCFVFQE
KSEAKVRLKEDLAAPLRTLQETARRIAKVSNESGIALVEDEYVQSFKVEMMDAVLQWCKG
AKFSDICNLTDIFEGSIIRCFRRLQELIRQMGAAAHAIGNTELEEKFAKSMELLERPNTV
VFNPS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctcaccccgattgacagctcggcgtcagctggaccatccacgaacgggaca
ccgaaagtgaagaaacaacggaagagaggagctaaagagagcggaacgttgactcctgat
cgacctgtcaagactcctcgaatgacagaagtggacgaggacaacgatgatcccatggat
gcgttggatggcgctaacgcccctgtcgatcctatggatgctattgttaatgctagtggc
ccagctgtagaccccatggaggctctggatggagaaactgacgctgccatgcccgtgagg
gcggacgagtttgagcaagaagcagagagggaagtggatgctgcgaaaggtctggatggg
gttacagcagaagaagggaagatgaagctggtgcatcaggtccgacaccaagtcgctgtt
ccaccaaatttcccttacatccccatctctcaacataaacgactagatcctcctgcgaga
acgtacaaattcgaactggatcctttccaattcgtctcgacatcttgcattgagcgcaat
gagtcggtactggtgtctgcacatacttcagcgggaaagacggtggtagcggagttcgcg
attgctacctgtctgaaggagggaaggagagtcgtctacacaagtccgatcaaggcactg
tcaaatcagaaatatcgagagttcctcgagactttcggtgacgtcggtctcatgactggt
gatgtgactatcaaccctaccgcttcttgtctggtgatgacaacggagattttgcgttcg
atgttgtatcgaggttcggaagtgatgagagaggtcgcatgggtcgtctttgatgaagtg
cattacatgcgagataaagaacgaggcgttgtctgggaagaaacgatcattctccttcct
cataccgttcgatatgtcttcctctccgctactatccccaattccatggaattcgcagaa
tggatctgcgccactcatgaacaaccatgtcacgttgtctacaccgatttcagaccgact
cccctgcaacattacctcttccctgcggggtccgatggtatctacctggtggtggacgaa
agaagtaactttagagaagacaacttccagaaagcgatggcagctctggcagcgggacaa
ggggaggattctgctgatccaaacagtggaaaaggcaggaagggaaagacgagaaaggga
ggtgccatgaaaggcgagaaatctgacatatacaagatcgtcactctcattatgcgacgc
aatctgaaccccgtgatcatcttcgccttctccaaacgtgaatgcgaggatctcgccatg
caaatgcaaaaattcgacttcaacaccgaagacgaagccgcgacagtggggcaggtattt
gagaatgcgatcggagctttatcagaggatgatcgaaaactgtctcaaatcgagggcatc
ctgccattgctcaagcggggcatcggaatccatcacggtggtctgttacctatcttgaag
gaggtgatcgagattttgttccaggaaggtttgattaaagctttgttcgctaccgagact
ttctcaatcggattgaacatgcctgcgaaaactgtggtattcacaagcgtaaggaaattc
gacggaaaggacttccgtaatctgtcgggtggtgaatacatccagatgtccggtcgagct
ggtcgacgtggtctcgatgcccgaggtatcgttatcatgatgtgcgacgagaagatcgag
ccggatgctgccaagggaatggtcaaaggccaggcagatcgactcgactcggctttccat
ctgggttacaatatgatcatcaaccttatgcgagtcgaaggtgtcagtccagaatacatg
ttggagagatgtttcttccagtttcaaaatactatgagtgtgcctgtcttagagaaacag
ctcaaggaagccgaagcggagcgcgatgctatcgtcgtcgagaaagaggatgatatcaag
gagtattatgagcttcgacaacagctcaaggagaaggggcaggatttccaagcggtcatc
tcgcaccccacgtacagcttgcgtttccttcaggcagggcgactggtcgagatccgagag
ggtgacaaggactttggatggggtgtcgtggtcgcctataacaagattgtcaacccgaaa
ggtcggactccggtctggacagagcaggatgcgccgcagatgcagtacacggtagacgtg
ctgacccgtatcgcttctgggtcatctgtaccacgagatcgatcggcttcgggtcttgtc
ccgccagcaaagggagaccaaggagaagtggcaatcatcgcttgttccttgactaccgtg
caagcaatcagccagtatcgaatcaatctgccgaaagatctgcgagggcaaggagagaag
aacaccgcattcaaggcggtcggggagatcaagaagaggatgcctgaaggtcctcctctg
ttagacccgatcaaaagcatgggcatcgaggataaatccttcaaggatctcgtcaagaaa
attgccatcctcgaagaccgactacaatcccttccgatcaccaaatctgccgatctcccc
agattatacgatctcttcgatcgcaaacaacagatgattgaatctgtcaaggctctcaaa
cgcaagatcaattcggtccacgacatccttcagttagaagagctcaaatcgaggaagaga
gtgctccgaagattgggcttcacttcgtcagatgatgtcgtggagatgaagggaagagtg
gcgtgtgaaatctcgacaggtgacgagttgatgttgacagagatgatgttcggaggcacg
tttggaactcttacaccggaacaatgtgctgccttgttgagttgtttcgtcttccaagag
aagtctgaggcgaaagtcagattaaaggaagatcttgctgcacctttacgtactctgcaa
gagacagcaagaagaatagcgaaagtgtccaacgagtctggtattgctctggtggaggat
gagtatgtgcagagtttcaaggtggagatgatggatgcggtacttcaatggtgcaaaggt
gccaaattctctgatatctgcaatttgacggacatctttgaaggatcaatcatcagatgt
tttagaagattacaagagctcataagacagatgggagcggctgctcacgcgattggtaat
accgagttggaggagaagttcgctaaaagcatggagttgctggagagacccaacacagta
gtattcaacccttcgtaa
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