Huiozyma naganishii: KNAG_0E02660
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Entry
KNAG_0E02660 CDS
T08174
Symbol
KNAG0E02660
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
kng
Huiozyma naganishii
Pathway
kng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNAG_0E02660 (KNAG0E02660)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kng03019
]
KNAG_0E02660 (KNAG0E02660)
03041 Spliceosome [BR:
kng03041
]
KNAG_0E02660 (KNAG0E02660)
03009 Ribosome biogenesis [BR:
kng03009
]
KNAG_0E02660 (KNAG0E02660)
03016 Transfer RNA biogenesis [BR:
kng03016
]
KNAG_0E02660 (KNAG0E02660)
Enzymes [BR:
kng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KNAG_0E02660 (KNAG0E02660)
Messenger RNA biogenesis [BR:
kng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
KNAG_0E02660 (KNAG0E02660)
Spliceosome [BR:
kng03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
KNAG_0E02660 (KNAG0E02660)
Complex C
U4/U6.U5 tri-SnRNP related factors
KNAG_0E02660 (KNAG0E02660)
Ribosome biogenesis [BR:
kng03009
]
Eukaryotic type
Pre-60S particles
Helicases
KNAG_0E02660 (KNAG0E02660)
Transfer RNA biogenesis [BR:
kng03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
KNAG_0E02660 (KNAG0E02660)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Death_3
Helicase_dom4_arc
nSTAND3
YodE
AAA_22
HTH_Tnp_ISL3
AAA_16
Motif
Other DBs
NCBI-GeneID:
34526225
NCBI-ProteinID:
XP_022464771
UniProt:
J7R6Q2
LinkDB
All DBs
Position
5:526419..529583
Genome browser
AA seq
1054 aa
AA seq
DB search
MESDLFDVFEEKPVVVEQNLEEEPVDTYTKNEKKHELSEDEGVETKKIRPNKSAGPKPKE
PVVPVLADSFEQEASREVEAITTLTAADEAEGKMRLSHQVRHQVALPPNYDYKPIGEHKR
VNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTS
PIKALSNQKYRELLADFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWV
IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT
NFRPTPLQHYLFPSHGDGIYLVVDEKSTFREENFQKAMASISNQEGDDPNSVNARGKKGQ
TFKGGAAKGDSKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKDA
LTKIFTNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL
FATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI
DEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFYQFQNVVSVP
VMEKKLLELGKEAESIHVEDEENVKSYYELRQTLDSYNEDVRHIMTHPANALSFLQPGRL
VEVVVNGTENYGWGAVVDFAKRINKRNPTAVYTDHESYIVNVVVGTMYIDSPVNLLKPFT
TDFPEGIRPAKEGEKSMCVIIPVTLESIHAIGNLRLYMPKDVKASGQKDTVGKSLKEVER
RHPKGIPLLDPIKNMKIEDEDFQKLLRKIKVLEAKLYSNPLSGSAKLSELYNQFSRKHAI
ETDMRQLKHKITESQSVIQLDDLRRRKRVLRRLGFCTPNDVIELKGRVACDISSGDELLL
TELIFNGNFNELKPEQAAALLSCFSFQERCKEAPRLKPELAEPLKNMRELASKIAKIMKD
SKMEVVEKDYVESFRHELMEVVYEWCKGATFTQICKMTDVYEGSLIRMFKRLEELVKELV
DVANTIGNTALREKMETVLKLIHRDIVSAGSLYL
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagatttatttgatgtctttgaggagaagccagtggttgtggaacagaactta
gaggaagagcctgtagacacatataccaagaacgagaaaaagcacgaactatctgaagat
gaaggcgttgaaactaaaaagataaggccaaataagtctgcgggacccaaaccaaaggaa
cctgttgttcccgtacttgccgactcttttgagcaagaagcatccagagaggttgaagct
attacaactctaacggcagccgatgaggcagaaggtaagatgaggttgtcccatcaagtg
cgtcatcaagtcgctttgcctccaaattacgactataagccaattggtgaacacaagaga
gtaaatgaagcgagaacctatccgttcactcttgatcctttccaagacactgctatttct
tgtattgatagaggagaatccgttctagtttctgcccatacatctgctggtaaaacggtg
gttgcagaatatgctattgcacaatctttgagggaaaagcaaagagtaatttacacatct
cctatcaaggctttgtccaatcagaaatacagagaactgctagctgatttcggtgatgtc
ggtctgatgaccggtgatattaccatcaaccctgatgctggttgtttggtcatgaccacc
gaaattctgagaagtatgttatacagaggtagtgaagtgatgagggaggttgcatgggtc
attttcgatgaagtgcattatatgagagacaaagagcgtggtgttgtttgggaagagaca
atcattttgttgcccgacaaggtccgttatgttttcctatctgccactatccccaatgct
atggaatttgcagaatggatttgcaaaattcattctcaaccttgccacattgtttacacc
aatttccgtcctactcccttgcaacattatctattcccaagtcatggtgatggtatatat
ctggtcgtcgatgagaagagcacgtttagagaagaaaattttcagaaagccatggcttca
atcagtaatcaggaaggtgatgaccctaattccgtcaatgccagagggaaaaagggccaa
acattcaaggggggtgcagccaagggtgactccaaaggtgacatctacaagattgtgaaa
atgatttggaagaagaaatacaacccggtcattgtattttccttcagtaagcgtgactgt
gaagaactagctttgaagatgtcaaagctggactttaactcagacgatgaaaaagatgct
ttgactaagatattcaccaacgccattgctctgctaccggaaacagatagagaattaccc
caaattaagcacattttacctttgcttagaagaggtatcggtatccatcattctggtttg
cttccaattcttaaggaagttattgaaattttattccaagaaggtttcctgaaggtactc
tttgctactgaaaccttttctatcggtttaaatatgcctgccaaaactgttgtgttcaca
tctgtaagaaagtgggatggtaaacaattccgttgggtctcaggtggggaatacattcaa
atgtcaggccgtgcaggtcgtcgtgggttagatgatcgtggtatagttatcatgatgatt
gatgaaaaaatggagcctcaagttgccaaaggtatggttaagggtcaagctgatcgtttg
gactccgcattccatctaggctacaatatgattttgaatttgatgagagtcgaaggtata
tctccagagtttatgctcgaacactccttctaccaattccaaaatgttgtctctgtacct
gtgatggagaagaaacttttggagctgggcaaggaagccgaatctattcatgttgaagat
gaagagaatgtgaaatcgtattacgaactaagacaaacattggacagctacaacgaggat
gttcgccacatcatgacacaccctgcaaatgccttgagctttctacaaccaggcagattg
gtagaagtggttgttaatgggaccgaaaactatggttggggtgctgtggttgattttgct
aagcgtatcaataagcgtaatccaactgccgtttacactgaccatgagtcgtacattgtg
aatgttgttgtcggcaccatgtacattgattctcctgtcaacctactaaaaccttttaca
acagatttcccagaaggtattagacccgctaaagagggtgaaaaatccatgtgtgtcatt
attcctgttacgttggagtcgattcatgccattggtaacctgcgtctatacatgccaaag
gacgtcaaagcaagtggtcaaaaagatacagttggcaaatcgttgaaggaggtagagcgc
agacatcccaagggaattccgctactcgacccgatcaagaacatgaagattgaagatgag
gactttcaaaagctattaagaaagattaaagttttggaagctaaactgtactcaaacccg
ctcagtgggtctgctaagttgagtgagttgtacaaccaattcagcagaaagcatgccata
gaaactgatatgagacagttgaagcataagatcactgaatcacaatcggttatccaatta
gacgaccttcgtcgccgtaagagagtgttgcgtcgtttggggttctgtacaccaaatgat
gttatcgagctaaagggtagagtggcatgcgatatttccagtggtgatgaactgctattg
acggaactaatcttcaacggtaatttcaatgagttgaaaccggaacaggctgctgctttg
ttgtcatgtttctctttccaggaacgttgcaaagaggcaccaagattgaaaccagagtta
gccgaacccctcaaaaatatgagagaacttgcctcgaagattgcgaaaatcatgaaggat
tcgaaaatggaggttgtggaaaaggattacgtcgaaagttttagacacgagctaatggaa
gttgtttacgagtggtgtaaaggtgccacattcacccagatctgtaaaatgactgatgtt
tacgagggatccctgattagaatgttcaagagattggaggagttggttaaagagttggtt
gatgttgctaacacaattggaaacacagcattgcgcgaaaagatggaaacggtcttgaaa
ttgatacatagagatatcgtctcggctggttcgttgtatttataa
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