KEGG   Huiozyma naganishii: KNAG_0F00620
Entry
KNAG_0F00620      CDS       T08174                                 
Symbol
KNAG0F00620
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
kng  Huiozyma naganishii
Pathway
kng03013  Nucleocytoplasmic transport
kng03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:kng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    KNAG_0F00620 (KNAG0F00620)
  09122 Translation
   03013 Nucleocytoplasmic transport
    KNAG_0F00620 (KNAG0F00620)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kng03019]
    KNAG_0F00620 (KNAG0F00620)
   03041 Spliceosome [BR:kng03041]
    KNAG_0F00620 (KNAG0F00620)
Messenger RNA biogenesis [BR:kng03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     KNAG_0F00620 (KNAG0F00620)
Spliceosome [BR:kng03041]
 Complex C
  Other components
   EJC/TREX
    KNAG_0F00620 (KNAG0F00620)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    KNAG_0F00620 (KNAG0F00620)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 WD40 WD40_CDC20-Fz EIF3I ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_ACSF4 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_VPS8 NBCH_WD40 Beta-prop_DCAF4 DUF5074 Beta-prop_LRRK2 WD40_like Beta-prop_SCAP
Other DBs
NCBI-GeneID: 34526446
NCBI-ProteinID: XP_022464977
UniProt: J7S869
LinkDB
Position
6:105380..106768
AA seq 462 aa
MTVQETSFLKRAVVTAALSNDLSASFIQDTLKKENIENVEDDRFLQVASSSKSRFGASGK
SQNQVHLLNFHSSGSYAAYTRADGSLTVWFLGSKGDFHTNETRKKLVPNAAGSDRVVTAI
SWNPNEPAQFATCSNNNEICFWDADDDVSRIKKLLVGHAKVKVNRVLFSTGGKWILCVAR
TEFLYILDSLKDYKQVCSYKLPKELDSGDGITSICWSNSNDYFFTGWRSGKIVLFQIDAL
GQVSLRLNTNGHRNSVTSLKFDPLGRYLISGSSDGTFTIWDASNMVCKRSFNDIGASVVS
IDVDHLGKIIAVCSGDDKLRFYDMNTGHLIELVNVNGLKSDIVFKFFPNKSWYIVSTGND
VLTVHQSKAPDELNYWQVARDSEYNAMHSRPERPNHATEFKSSSSRGAARARPGAPHTQG
AIGKNKPRESLARPSRFNRDEYRDSEREAGRSRPFRSGRFTR
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgactgtacaagaaacctcttttctaaaaagagccgtggttacggccgctttatccaac
gatctttccgcttcttttatccaggacactttgaagaaagaaaacatcgaaaatgtcgag
gatgacagattcctccaagtagcatcttcctcaaaatccagatttggggcttctggtaaa
tcccagaaccaagtccatctactgaattttcacagttccgggagttacgcagcatatact
agagcagacggatcattgaccgtttggtttcttggaagtaaaggtgacttccacacgaat
gaaacacgaaaaaaacttgttccaaatgctgctggttcagacagggtagttaccgctata
tcgtggaaccccaatgaaccagctcagtttgctacttgctccaataacaatgaaatctgc
ttctgggacgccgatgacgatgtcagtagaataaaaaaactacttgtgggacatgccaag
gtgaaggtaaatagagtactgttcagcactggcgggaagtggatattatgtgttgcgaga
acagagtttctatacatactcgattctttaaaggattacaagcaagtgtgcagctataag
ttgcctaaggaactggactctggcgatgggataacgtccatatgctggagtaattctaat
gactactttttcactggatggagaagtggtaagattgtactcttccaaattgatgctctc
ggtcaagtaagcctaaggttaaatacaaatggtcaccgcaattcagtaacctcccttaaa
tttgatccgcttggaagatacctcatcagcggaagttcagatgggaccttcactatatgg
gatgcaagtaatatggtttgtaaacgatccttcaatgatatcggtgcctctgttgtctct
atcgacgtggatcatttggggaagattattgctgtttgttctggagatgacaaattgcgt
ttctatgatatgaatactggccatctgattgagttggtaaatgtaaatggattaaaatct
gacattgtcttcaagtttttcccaaacaaatcatggtacatcgtttcaactgggaatgat
gtattgactgtgcatcaatccaaagctccagatgagctaaactactggcaagttgcccgg
gactcggagtacaacgctatgcactctcgtcccgaaaggccaaaccacgctacagaattt
aaatcctcctcctccagaggagccgctagagcacggcctggggcgcctcacacacaggga
gcaattgggaaaaacaaacctcgagaatctctggcgagaccttctagatttaacagggat
gaatacagggattcggaaagagaagcaggtagatctcgaccttttagatcaggtagattt
acccgttga

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