Knoellia sp. S7-12: V6K52_04140
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Entry
V6K52_04140 CDS
T10549
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
kno Knoellia sp. S7-12
Brite
KEGG Orthology (KO) [BR:
kno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kno03032
]
V6K52_04140 (topA)
03400 DNA repair and recombination proteins [BR:
kno03400
]
V6K52_04140 (topA)
Enzymes [BR:
kno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V6K52_04140 (topA)
DNA replication proteins [BR:
kno03032
]
Prokaryotic type
DNA Topoisomerases
V6K52_04140 (topA)
DNA repair and recombination proteins [BR:
kno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V6K52_04140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XAU40259
LinkDB
All DBs
Position
complement(879326..882202)
Genome browser
AA seq
958 aa
AA seq
DB search
MSPTSTGRKLVIVESPAKAKTIAGYLGPDWIVEASVGHIRDIPTPSEMPADMKKGPFGRF
GVDVDNDFEPYYVVDADKKKKVAELKKALKSSTELYLATDEDREGEAIAWHLLETLQPKV
PVKRMVFHEITKEAIQRAAANTRDLDTALVDAQETRRILDRLYGYEISPVLWRKVKAGLS
AGRVQSVATRIVVERERERMAFRSANYWDVEGEFTPDSESSAFTARLSSVDGKRVATGRD
FGDDGRLKGEVAHLDEAAATGIAHAVMAADVTVTNVSEKPYTRRPSAPFTTSTLQQEASR
KLRLSSKNAMRVAQRLYENGYITYMRTDSTALSQSALTAARQQARDLYGGDYVPDAPRNY
AKKVKNAQEAHEAIRPAGDRFRTPAQVAGEIRGDEFALYELIWKRTIASQMADAKGSTAT
VKLGATLDREAPAERVEFSASGTVITFRGFLAAYEEGRDEQRNANADEERRLPRLGEGTA
LKVIRAEADGHDTSPPARYTEATLVKAMEEKGIGRPSTYASTIGTIQDRGYVSNRGNALV
PSWLAFAVTRLMEEHFTRLVDYDFTASMEEDLDQIAGGNAERTTWLKRFYFGDEASSSEG
LRDLVADLGDIDARAISTIDIGDGIVVRVGRYGPYVEEVAPAGVDPVTGEVSEAYAAPST
SEGDSGADGADSSDKPATPRRATINDDIAPDEMTPEKARELLATAADDGRVLGQEPETGR
DIIAKSGRYGPYVTEVLSQDPADVSGATKSRGKAKVKPRTASLFADMDLATLDLDTALKL
LSLPRVVGLTTDKVTGEDGKETSVQVEITAQNGRYGPYLKKGTDSRSLETEQQLFDITLE
QAEAIYAQPKQRGRAAAKPPLKEFGPDPVSGKPVVVKDGRFGEYVTDGETNTTLRRDDDL
ETMTAARAFEMLADKRAKGPTTRKRAAKKTVKKAATKKTAAKKTAAKKTTAKKAAKKA
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgaccagcacgggccgcaagctcgtcatcgtcgagtcacccgcgaaggccaag
accatcgccggctatctcggccccgactggatcgttgaggcgtccgtcggccacatccgc
gacatccccaccccgtcggagatgcccgccgacatgaagaagggccccttcggccgcttc
ggtgtcgacgtcgacaacgacttcgagccctactacgtcgtcgacgccgacaagaagaag
aaggtcgccgagctcaagaaggcactgaagagctctactgagttgtatttggcaacagat
gaggaccgcgagggcgaggccatcgcgtggcacctcctcgagaccctgcagcccaaggtc
ccggtcaagcgcatggtcttccacgagatcaccaaggaagcgatccagcgtgccgcggcc
aacacccgcgacctcgacaccgccctcgtcgacgcccaggagacccgccgcatcctcgac
cgtctctacggctacgagatctcgccggtcctgtggcgcaaggtcaaggcgggcctctcc
gccggccgcgtgcagtccgtcgcgacccgcatcgtcgtcgagcgtgagcgcgagcgcatg
gccttccggtcggcgaactactgggacgtcgagggcgaattcacgcccgactccgagtcc
tccgccttcacggctcgcctgtcctcggtcgacggcaagcgcgtcgccaccggtcgtgac
ttcggtgacgatggtcggctcaagggcgaggtcgcgcacctcgacgaggccgccgccacc
ggcatcgcccacgcggtcatggccgccgacgtcacggtcaccaacgtcagcgagaagccc
tacacccgccgccccagcgcgccgttcacgacgagcaccctccagcaggaggcctcgcgc
aagctgcgcctcagcagcaagaacgcgatgcgggtcgcgcagcgtctctacgagaacggc
tacatcacctacatgcgtaccgacagcaccgcgctgtcgcagtccgcactcaccgctgcc
cgccagcaggcgcgcgacctctacggcggcgactatgtccctgacgcaccgcgcaactac
gccaagaaggtcaagaacgcacaggaggcccacgaggccatccgccccgccggtgaccgc
ttccgcaccccggcccaggtcgcaggcgagatccgcggcgatgaattcgccctctatgag
ctgatctggaagcgcaccatcgcctcgcagatggccgatgccaagggttcgacggcgacc
gtcaagctcggtgccaccctcgatcgcgaggcgcccgcagagcgggtcgagttctccgcc
agcggaacggtcatcacgttccgaggcttcctcgcggcatacgaagaaggccgtgacgag
cagcgcaacgcgaacgccgacgaggagcgtcgcctcccccgcctgggcgagggcaccgca
ctcaaggtcatccgtgccgaggccgacgggcacgacacgtcaccgcccgcccgctacacc
gaggccacgctcgtgaaagccatggaggagaagggtattggtcgcccgtcgacctacgcc
tccaccatcggcacgatccaggaccgcggctacgtctcgaaccgcggcaacgcgctcgtg
ccgtcctggctcgccttcgcggtgacgcgcctcatggaggagcacttcacccggctcgtc
gactacgacttcaccgcgtccatggaggaggacctcgaccagatcgccggcggcaacgcc
gagcgcaccacctggctcaagcgcttctacttcggcgacgaggcaagctccagcgaaggc
ctgcgtgacctcgtcgcggacctcggtgacatcgacgcccgcgccatctcgacgatcgac
atcggtgacggcatcgtcgtgcgcgtcggtcgctacggcccatacgtcgaggaggtcgca
cccgccggtgtcgaccccgtcaccggcgaggtctctgaggcgtatgccgctccttcgact
tccgagggcgactccggtgccgatggtgccgactcctccgacaagcctgcgactcctcgc
cgcgcgacgatcaacgacgacatcgcgcccgacgagatgacgcccgagaaggcgcgtgag
ctgctcgcgaccgccgccgacgacggtcgcgtgctcggccaggagccggagaccggccgc
gacatcatcgcgaagtcgggacgctatgggccctacgtgaccgaggtcttgtcccaagac
ccagcggacgtctcgggtgcgacgaagtcgcgaggcaaggccaaggtcaagccgcgcacg
gcctcgctctttgccgacatggacctggcgacgctcgacctcgacactgcactcaagctg
ctctccctcccccgtgtcgtcggtctcaccaccgacaaggtcaccggcgaggacggcaag
gagacgtcagtgcaggtggagatcaccgcgcagaacggtcgctacggcccctacctcaag
aagggcaccgactcgcgctcgctcgagaccgagcagcagctcttcgacatcacgctcgag
caggcggaagcaatctatgcccagcccaagcaacgtggccgggctgccgccaagccgcca
ctcaaggagttcggtcccgaccccgtgtcgggcaagccggtcgtcgtcaaggacggtcgc
ttcggcgagtacgtcaccgacggcgagaccaacacgaccctgcgccgcgacgacgatctc
gagacgatgacggcggctcgcgcgttcgagatgctggccgacaagcgcgccaagggtccg
acgacccgcaagcgcgccgccaagaagacggtgaagaaggccgcgaccaagaagaccgct
gcaaagaagaccgcggccaagaagacgacggcgaagaaggccgccaagaaggcctga
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