Knoellia sp. S7-12: V6K52_12315
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Entry
V6K52_12315 CDS
T10549
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kno Knoellia sp. S7-12
Brite
Enzymes [BR:
kno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V6K52_12315 (hrpA)
Messenger RNA biogenesis [BR:
kno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V6K52_12315 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XAU38018
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Position
complement(2573168..2577037)
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AA seq
1289 aa
AA seq
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MPQPERQRGVTDSIPTDRGPIDPAQLHYPAQLPVVERRDDILAALRDHQVVVIAGETGSG
KTTQLPKMCLELGLGGTGQIGHTQPRRIAARSVAERIAEEMEVELGDLVGYQVRFTDHSS
DRTRVKVMTDGILLAEMQRDRDLRRYDTIIIDEAHERSLNIDFILGYLKSLLPRRPDLKV
VITSATIDPARFAEHFSTDARGNIVREVPVIEVSGRTYPVEIRYRPLVERGAGGEITQER
DQVAAVCDAVTELWTETPPGHTATDILVFFSGEREIRDAADALNGLKLPSTEVLPLYARL
SANEQHRVFTRGKGRRIILATNVAETSLTVPGIGYVIDTGTARISRYSQRTKVQRLPIEP
ISQASASQRSGRCGRVADGIAVRLYSQEEFESRAEFTEPEIQRTSLAAVILQMTALGLGD
IARFPFVDAPDPKQIADGVRLLDELNALQDAKGRRGERRLTAYGKTLARLPLDPRMGRMI
IEANRLGCTREVLVIVAALTIQDPRERPVDKEALAQQQHARFKSETSDFAGFHALWRYLK
EQQKALSSSAFRRMCKAEFLHYLRIREWQDLHQQLRSACKSARIDPDQSTAAPDGEPDWD
IVHKALLAGLLSHIGVRDEQKREYAGARGSRFGINPGSGLFKKQPDVVMAAELVETTRLW
ARVNAAIDPEWAEEVGAHVIKRTYSEPRWSKSAGSVVASERVTLYGVPLVVDRTVQYGRI
NAEEARDLFIRNALVEGDWDTHHKFWKANTELLQRLSELEERARRRDLIVDDEVVFSFYD
ARIPHDITSVRHFDRWWKGEQRSRPDLLTFSEALLTREDVDAVSANDYPRRWRQGDLELD
VTYQFSPGAAADGVTVHVPTAILNQVTPDGFDWQVPGLREDLAIALLKSLPKATRRHFVP
TPDHARAALAGAESSTGAAFTDELARVLRGRTGVNIPAGEWDWERVPDHLRITFSVEAPG
GRLIARGKDLDELRPKSQGAVRQGMAKAGASIERSGLTDWSVDDVPRTFEGRAGGHTIQG
HPALVDEGASVSLRVLDHAGSAEAAHRSGVRRLLLLNTTAPWKRVLARLSNAQKLALGQN
PHGSVPALLEDCLAAAVDSIVADLGTGPGAGGAVRTKADFETAHTAVRTHVVTRVLQVIE
AVEPVLALATDVRRRLDSLETSAVRNSLAATIADVRAQLDGLIRPGFVADSGLERLPHLQ
RYLRAMLQRLERAATNPREAQLQTQIDAIETAYADLLDALPATGRRAPAVTDIAWTIEEL
RVSLFAQALGTAHPVSEKRVRAAIAAVAP
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcagccagaacgacaacgaggggtgacggactccattcccaccgaccgcggcccc
atagaccccgcgcagctgcactatccggcgcagctccctgtcgtcgagcgccgtgatgac
atcctcgcggcccttcgggaccaccaggttgtcgtcatcgcgggggagaccggctccggc
aagacgacccagctccccaagatgtgcctcgaactggggctcggcggcaccgggcagatc
ggtcacacgcagccgcgccgcatcgccgcccgctccgtcgccgaacgcatcgccgaggag
atggaggtcgagctcggtgacctcgtcggctaccaggtgcgcttcaccgaccacagcagc
gaccgcacccgcgtcaaggtcatgaccgacggcatcctcctcgccgagatgcagcgcgac
cgcgacctgcgccgctacgacacgatcatcatcgacgaggcccacgagcggtcgctcaac
atcgacttcatcctgggctacctcaagtccctcctcccgcgcagacccgacctcaaggtc
gtcatcacctcggcgacgatcgacccggcccgattcgccgagcatttctccaccgatgcc
cgcggcaacatcgtccgcgaggtcccggtcatcgaggtctctggacgcacctaccccgtt
gagatccgctaccgccctctcgtcgagcgaggcgcgggcggagagatcacgcaggaacgc
gaccaggtcgccgccgtctgcgatgccgtcaccgagctctggaccgagacaccaccgggg
cacactgcgaccgacatcctcgtgttcttctcgggggagcgagagatccgcgacgccgcc
gacgccctgaacggcctcaagctgccgagcaccgaggtcctcccgctctatgcccggctc
tcggccaacgagcaacaccgcgtcttcacccggggcaagggtcgccggatcatcctcgcc
accaacgtcgccgagacgtcgctgaccgtccccggcatcggctacgtcatcgacaccggc
acggcccgcatctcgcgctactcccagcgcaccaaggtccagcgtctccccatcgagccg
atctcccaggcgagtgcctcgcagcggtccggacgatgcggtcgagtcgcggatggcatt
gcggtcaggctctattcgcaagaagagttcgagtcgcgcgcagagttcaccgagcccgag
atccagcgcacctcgctcgccgccgtcatcctccagatgaccgccctcgggctcggcgac
atcgcgcgcttcccgttcgtcgacgcccccgaccccaagcagatcgccgacggcgtacgc
ctcctcgacgaactcaatgccctccaggacgccaagggcaggcgcggcgagaggcgactc
acggcatacggcaagaccctggcaagactgccgctcgacccccgcatgggccggatgatc
atcgaggccaaccggctcggttgcacccgcgaggtgctcgtcatcgtggcggccctcacc
atccaggacccgcgagagcggcccgtcgacaaggaggcgctcgctcagcagcagcacgcc
cgcttcaagagcgagacttccgacttcgccggcttccacgccctgtggcgctatctcaag
gagcagcagaaagcgttgtccagcagcgcttttcgccgtatgtgcaaggccgagttcctg
cactacctgcgcatccgcgagtggcaggacctccaccagcagctccgcagtgcctgcaag
tcggcccgcatcgaccccgaccagagcaccgcagcccccgacggcgaaccggactgggac
atcgtccacaaggctctgctcgccggcctcctgtcacacatcggggtccgagacgaacaa
aagcgtgagtatgccggcgcgcggggttcgcgtttcggcatcaatcccgggtccggcctg
ttcaagaagcagcccgacgtcgtcatggccgccgagctggtcgagacgacgcgcctgtgg
gcccgggtcaacgccgcaatcgaccccgagtgggccgaagaggtcggcgcccacgtcatc
aagcgcacctacagcgagccgcgatggagcaagtccgcgggcagtgtcgtcgcctccgag
cgagtgacgctctatggcgtcccgctcgtcgtcgaccgcaccgtgcagtacggccggatc
aacgcagaggaagcgcgcgacctcttcatccgcaacgcccttgtcgagggtgactgggac
acccatcacaagttctggaaggccaacaccgaactcctgcagcgtctttcggagctcgag
gagcgcgcccggcgacgtgacctcatcgttgacgacgaagttgtcttctcgttctacgac
gcgcggatcccgcacgacatcacgtcggtgcggcacttcgaccggtggtggaagggtgag
cagcgcagcaggccggacttgctgaccttcagcgaagcactgctgacacgggaggacgtc
gacgccgtgtcggcgaacgactacccgcgcaggtggcggcagggtgacctcgagctggac
gtgacctatcagttctcgccgggggcagccgccgatggtgtcaccgtccacgtccccacg
gcgatcctcaaccaggtgacaccggatggcttcgactggcaggtgccggggctgcgcgag
gacctcgccatcgccctcctcaagtcactgcccaaggcgacgcgacgccacttcgtcccc
acgcccgaccacgctcgtgccgccctcgctggcgccgagtcgtccacgggtgcagccttc
acggacgagctggcccgggtcctgcgcggccgcaccggcgtgaacatccctgcgggagag
tgggactgggagcgggtgcccgatcatttgcgcatcaccttctcggtcgaagctcccggc
ggacgtctcattgcgcgcggcaaggacctcgacgagctgcgcccgaagtcgcagggcgcc
gtccgtcagggcatggccaaggccggcgcgtcgatcgagcgcagtggcctcacggactgg
agcgtcgatgacgtgccgcgcacgttcgagggtcgcgcgggcgggcacacgatccaggga
caccccgccctcgtcgacgagggcgcaagcgtctcgctccgagtcctcgaccacgcgggc
tcggccgaggcggctcatcgctccggggttcgacggctcctgctgctcaacaccacggct
ccgtggaagcgcgttctcgcccgactcagcaacgcccagaagctcgcgctcggccagaat
ccgcacgggtccgtcccggctctcctcgaggactgcctcgctgcggcagtcgactcgatc
gttgcggacctggggactgggcccggagctgggggagcggtcaggaccaaggccgacttc
gagaccgcccacaccgcagtccgcacacacgtcgtcacccgggtcctgcaggtcatcgag
gcggtcgagccggtgctggctctcgcgaccgacgtccgacggcggctcgactccctggag
acgagcgccgtcaggaacagcctggccgcaacgatcgccgacgtccgggcccagctcgat
ggcctcatccgccccgggttcgtggccgacagcggtctcgagcgactcccacacctccag
cgctatcttcgcgcgatgctccagcgactcgagagggccgcaaccaaccctcgggaagcg
caactgcagacacagatcgacgcgatcgagacggcatacgccgatctgctcgacgcgctg
ccggcgaccgggaggcgggcgcctgcggtgaccgacatcgcctggacgattgaggaacta
cgagtcagcctgtttgcgcaagccctcggcacggcccacccggtgagcgagaagcgggtc
cgcgcggccatcgcggccgtggcaccctga
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