Knoellia sp. S7-12: V6K52_15895
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Entry
V6K52_15895 CDS
T10549
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kno Knoellia sp. S7-12
Pathway
kno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6K52_15895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kno03400
]
V6K52_15895 (mfd)
Enzymes [BR:
kno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6K52_15895 (mfd)
DNA repair and recombination proteins [BR:
kno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V6K52_15895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
XAU38716
LinkDB
All DBs
Position
complement(3322244..3325861)
Genome browser
AA seq
1205 aa
AA seq
DB search
MPTLQPVVDHFGAAPQIHSFLETATGPGTQTLDVSVSAGARPALIAAAVQRLRATAPDRL
PLLVVTATSREAEDLTAALGCVLDPDVIADFPSWETLPHERLSPRSDTVGRRLAVLRRLA
HPASVADDDVAHGPLSVVVAPVRAVLQPISIGLGDLTPVALRAGEDHNLDEVVEALAGAA
YSRTDLVERRGEFAVRGGILDVFPPTEEHPLRVEFWGDTIEEIRWFKVADQRSLEVASHG
LWAPPCREVLLTDAVRDRAAVLADQLPGAADLLHKLAAGIAVEGMESLAPALVDGMESML
DSFPAGSPVVTCDPERVRTRAHDLVATSQEFLEAGWANAAAGNAVPIDLAKILGSASFWS
VGDLRDHASATQHPWWDLTPFALDLETMDTTEAGVAETGTVDPTAYRGDIESAAADLRSW
TDDGWRVLVATDGQGSAKRIVEVLGEAEVPARLETALDTFEPGIVHVTTAQLGRGFVHAA
GRLVVLTETDLTGTPSTGPSTKDMRRMPSRRRNQVDPLQLKPGDFVVHEQHGVGKFVEMM
QRTIQGATREYLVLEYAPGKRGHPGDRLFVPTDQLDQITRYVGGEQPTLNKMGGSDWKTT
KSKARRYVKQIAAELIQLYSARMATKGHAFSRDTPWQRELEDAFAYVETPDQLSSIDEVK
ADMEREVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQAAILVPTTLLVQQHLQTFTERY
APFPVTVKALSRFQSKKESEAVIEGLANGSIDLVIGTHRLLSDSIKFKDLGLVVVDEEQR
FGVEHKEQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAY
EEKQITAAVRREMLREGQVFYIHNKVSTIEKAAARIRELVPEARIATAHGKMGEHRLEQV
VLDFWENRFDVLVCTTIVETGLDISNANTLIVERADRLGLSQLHQLRGRVGRGRERAYSY
FLYPPENPLTETAHDRLQTIASHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFD
LYVRLVGEAVSTFRGDVNEEIGEIKIELPVDAHLPHDYVPGERLRLEAYKKLATVVDEAA
LVEIEAELVDRYGKPPEAVRNLIEVARLRTVARAAGIKDISMQGTTVRFGPVELRESQEL
RLQRLYPGSIIKEALGTILVPKPMTARVGGQPLRNHAVLEWAGAVIRSVVMDNVGEAARV
AESAR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgttgcaaccggttgtcgatcatttcggcgccgccccacagatccactcattc
ctcgagaccgccaccggacctggcacgcagacgctcgacgtctccgtcagcgccggtgcc
cgtcctgccctcatcgccgctgcggtgcagcgcctgcgcgcgaccgcacccgaccgactg
cccctgctcgtcgtcaccgcgacgagccgcgaggccgaagacctcacggcggccctgggt
tgcgtcctcgaccctgacgtcatcgcggacttcccgtcctgggagacgctgccgcacgag
cggctcagtccgcgctccgacaccgtcggtcgccgtctggccgtgctgcgccgcctcgcc
cacccggcctcggtcgccgatgacgacgtcgcacacggtccactgtcggtcgtcgtggcg
ccggtgcgcgctgtcctgcagccgatctcgataggtctcggtgacctcacgccggtcgcc
ctgcgcgccggtgaggaccacaacctggacgaggtcgtcgaggcgcttgctggtgctgcc
tacagtcgcactgacctcgtggagcgtcgtggcgagttcgccgtgcgcggtggcatcctg
gacgtcttcccgccgaccgaggagcacccgctccgcgtcgagttctggggcgacacgatc
gaagagatccgctggttcaaggtcgccgaccagcgttccctcgaggtcgcgtcgcacgga
ctgtgggccccgccctgccgcgaggtcctgctcaccgacgccgtgcgtgaccgtgctgcg
gtgttggctgaccagctgcccggcgctgctgacctgctccacaagcttgccgcaggcatc
gccgtcgagggcatggagtcgctggctccggccctggtcgacggcatggagtcaatgctc
gacagcttccccgccggctcacccgtcgtcacctgcgatcccgagcgcgtgcggactcgt
gcccacgacctcgtggccacgagccaggagttcctcgaggccggctgggccaacgccgcc
gccggcaacgccgtccccatcgacctcgcgaagatcctcgggtcggcctcgttctggtcc
gtcggtgacctgcgcgaccacgccagtgcgacgcagcacccgtggtgggacctcacgccc
ttcgccctcgatctggagacgatggacacgaccgaggcaggcgtcgcagagaccggcacc
gtggaccccacggcataccggggtgacatcgagtccgctgccgcagacctgcgctcctgg
accgacgacggttggcgcgtcctcgtggccaccgacggtcaggggtcggccaagcgcatc
gtcgaggtcctcggcgaggccgaggtcccggcccgcctcgagaccgcgctcgacacgttc
gagcccggaatcgtccacgtcacgaccgcccagctcgggcgcggtttcgtccatgctgcg
ggccgcctcgtcgtcctcaccgagaccgacctcaccggcaccccgtcgacgggtccgtcg
accaaggacatgcggcgtatgccgtcacgcaggcgcaaccaggtcgaccctctccagctc
aagccgggcgacttcgtcgtccacgagcagcacggtgtgggcaagttcgtcgagatgatg
cagcgcaccatccagggcgccacacgcgagtacctcgtgctcgaatacgccccgggcaag
cgtggacacccgggcgaccgcctgttcgtgccgacggaccagctcgaccagatcactcgc
tacgtcggtggcgagcagccgaccctcaacaagatgggcggctcggactggaagacgacc
aagtccaaggcgcgccgctacgtcaagcagatcgcggccgaactcatccagctctacagc
gcccggatggcgaccaaggggcacgcattctcgcgcgacaccccgtggcagcgcgagctc
gaggacgccttcgcctacgtcgagacgcccgaccagctgagctcaatcgacgaggtcaag
gccgacatggagcgagaggtccccatggatcggctcatctgtggcgacgtcggctatggc
aagaccgagatcgcggtgcgtgctgccttcaaggcgatccaggacggcaagcaggccgcc
atcctcgtgcccacgaccctgctcgtgcagcagcacctgcagaccttcaccgagcgctac
gcgcccttccccgtgacggtcaaggcactcagccggttccagtccaaaaaggaatccgag
gcggtcatcgagggcctcgccaacggctccatcgacctcgtcatcggcacccaccggctg
ctctccgacagcatcaagttcaaggatctcggactcgtcgtcgtcgatgaggagcagcgc
ttcggggtcgagcacaaggagcagctcaagcagatgcggacagcggtcgacgtgctggcg
atgtcggccacgccgatcccgcgcacactcgagatggctgtgaccggcatacgcgaaatg
tccactctcgcaacgcctcccgaggagcggcacccggttctcacctacgtcggcgcctac
gaggagaagcagatcactgccgcggtgcggcgcgagatgctgcgcgagggccaggtcttc
tacatccacaacaaggtgtcgacgatcgagaaggctgcggctcgcatccgcgaactcgtc
cccgaggcgcgcatcgccaccgcccacggcaagatgggcgagcaccggctcgaacaggtc
gtcctcgacttctgggagaaccgcttcgacgtcctcgtctgcacgacgatcgtggagacc
ggactcgacatctccaacgccaacacgctcatcgtcgagcgtgccgaccggctcggactc
agccagctgcaccagctgcgtggacgggtcgggcgtggccgcgagcgcgcctactcctac
ttcctctatccgcccgagaacccgctcaccgagacggcacacgaccgtctccagaccatc
gccagccacaccgatctcggtgccggcatgcaggtcgcgatgaaggacctcgagatccgc
ggcgccggcaacctcctcggtggcgagcagtccggccacatcgcgggcgtcgggttcgac
ctctacgtccggctcgtcggcgaggccgtctcgaccttccgtggtgacgtcaacgaggag
atcggcgagatcaagatcgagctgccggtcgatgcgcatctgccgcacgactacgtgccg
ggggagcggctgcgcctcgaggcctacaagaagctcgcgaccgtggtggacgaagccgcg
ctggtcgagatcgaggccgagctcgtcgaccgctacggcaagccaccggaggccgtccgc
aacctcatcgaggtggcccggctgcgcacggtcgcgcgcgctgccggcatcaaggacatc
tccatgcagggcacgacggtgcgcttcggcccggtcgagttgcgcgagagccaagagctg
cgacttcagcgcctctatccgggctcgatcatcaaggaggcgctcggcacgatcctcgtg
cccaaaccgatgacggctcgcgtcggagggcagccgctgcgcaaccacgcggtgctcgag
tgggcaggtgcggtcatccgcagtgtcgtcatggacaatgtcggagaagcagcaagggtg
gcggagtccgcccgatga
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