Knoellia sp. S7-12: V6K52_16200
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Entry
V6K52_16200 CDS
T10549
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kno Knoellia sp. S7-12
Pathway
kno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6K52_16200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kno03019
]
V6K52_16200
03009 Ribosome biogenesis [BR:
kno03009
]
V6K52_16200
Enzymes [BR:
kno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6K52_16200
Messenger RNA biogenesis [BR:
kno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6K52_16200
Ribosome biogenesis [BR:
kno03009
]
Prokaryotic type
rRNA helicases
V6K52_16200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
DUF7853
adh_short
HEM4
P-loop_SecA
UvrA_inter
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAU41422
LinkDB
All DBs
Position
complement(3386847..3388619)
Genome browser
AA seq
590 aa
AA seq
DB search
MTPQEPEQNTFADLGLDERVVRALKDVGYETPSPIQAATIPALLEGRHVVGLAQTGTGKT
AAFALPILSRLDLKQKSPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGV
QLSALRRGVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADT
PAEKHVALFSATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYLFVSYPQKIDALT
RILEVENFEGMIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLD
ILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLL
KAIERATKTTLTEMQLPSVEDINATRLGRFDDRITAALSSNELDAFRDVIAHYVREHNAP
EADVAAALAIVLQGDEPMLLGPDPVRPPRRERDSGGAQGGRDFADRGPRRDDRGGGRFDK
SGGSERPARRGSNVPMATYKIAVGRRHKVEPRQIVGALANEGGLGRQDFGHIDIRADHSL
VELPATLPSGTWDLLRTTRISGQLIELSESSERGGRLDKKPHRKGGPRER
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaccccccaagagcctgagcagaacaccttcgccgacctcggcctggacgaacgagtc
gtccgggcgttgaaggacgtgggctacgaaacgccgtccccgatccaggccgcgacgatc
ccggccctcctcgaggggcgccacgtcgtgggcctcgcgcagaccggaaccggcaagacg
gcggccttcgcgctgcccatcctcagccgcctcgacctcaagcagaagtccccgcaggcc
ctcgtcctcgcgccgacccgtgagctcgcgctccaggtctgtgaggccttcgagaagtac
gcctcccgcatgcccggcgtccacgtgctgcccgtctatggcggacaggcctatggcgtg
cagctgagcgccctgcgccgcggtgtccacatcgtcgtcggcacgcccggccgcatcatg
gaccacctcgagaagggcaccctcgacctgtcggagctgcgcttccttgtcctcgacgag
gccgacgagatgctcaagatgggcttcgccgaggacgtcgagacgatcctcgcggacacc
cctgccgagaagcacgtggccctgttctctgcgacgatgccctcgcagatccgccgcatc
tccaagaaatacctcaccgacgccctcgagatcacggtcgagcgcacgacggagaccgcg
cccaacatcacgcagcgctacctcttcgtctcctatccgcagaagatcgacgccctgacc
cgcatcctcgaggtcgagaacttcgaggggatgatcgtcttcgtccggaccaagaacgag
accgagatgctcgcggagaagctgcgggcccgtggtttctcggccacggcaatcaacggg
gacatcgcccagaatcagcgtgagcgcaccgtcgcccagctcaagtccggcaagctcgac
atcctcgtggccaccgatgtcgcggcccgtggcctcgacgtcgagcggatcagccacgtc
gtcaactacgacatccccaccgacaccgagtcctatgtgcaccgcatcggtcgcacgggc
cgcgccggtcgctcgggcgacgcaatctcgtttgtcacgccgcgtgagaagtacctgctc
aaggccatcgagagggccaccaagacgacgctgaccgagatgcagctgccgagcgtcgag
gacatcaacgccacccgcctcggccgcttcgacgaccgcatcaccgcggccctgtcctcg
aacgagctcgacgccttccgcgacgtcatcgcccactacgtgcgtgagcacaacgcaccc
gaggccgacgtggctgcggcactggcgatcgtgctccagggcgacgagccgatgctgctc
ggtcctgacccggtgcgtccgccccgacgcgagcgcgactccggtggcgcccagggcggt
cgcgacttcgcagaccgcggcccgcgccgtgatgaccgcggtggtggtcgcttcgacaag
agcggcggcagcgaacgtccggcccgacgtggctcgaacgtccccatggcgacctacaag
atcgccgtcgggcgtcggcacaaggtggagccgcgtcagatcgtcggcgctctcgccaat
gagggcgggctcggccgacaggacttcggccacattgacatccgcgcggaccactcgctc
gtcgagctgcccgcgaccctgccctcagggacgtgggacctgctgcgcacgacccgcatc
tcgggtcagctcatcgagctgagcgagtcgagcgagcgtggcggacgtctggacaagaag
ccgcaccgcaagggcggcccgcgggagcgctga
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