Kolteria novifilia: Pan216_05330
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Entry
Pan216_05330 CDS
T11180
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
knv Kolteria novifilia
Pathway
knv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan216_05330 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
knv03019
]
Pan216_05330 (rnr)
03016 Transfer RNA biogenesis [BR:
knv03016
]
Pan216_05330 (rnr)
Enzymes [BR:
knv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pan216_05330 (rnr)
Messenger RNA biogenesis [BR:
knv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan216_05330 (rnr)
Transfer RNA biogenesis [BR:
knv03016
]
Prokaryotic type
tRNA degradation factors
Pan216_05330 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QDU59701
UniProt:
A0A518AY97
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All DBs
Position
692589..694799
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AA seq
736 aa
AA seq
DB search
MSSTIEERLLDFLRQASYRPVKPKVLARQLSIGSEDYGEFRQTIKTMIRRGLIEIGNKNT
VRLAQSRSRLLGVYRQTRKGDGWVTPRPGQGSPPGDIHIGQRFTSDAARGDVVLVEVIKP
PRSTRAAEGRINEIVERASSHFVGTYFTTGHEGFVRVDGNAFHEPIYVGDPGAKGAKQGD
KVVFEMLRFPSPDMTGEGVLTEVLGPRGAPGVDLLAVVRQFHLPDTFSSQALDEARAQAR
LFDEQPVDPNRVDLTGTTIVTIDPVDARDFDDAISLSRDDKGFWNLGVHIADVASFVPQG
SVLDAEARERGTSVYLPGRVIPMLPELISNGLASLQEGKTRYVKSAFIEFDAEGRITNTR
FSNSVIKVTRRFAYEQVMEFFESSDDLADSIPPEIRELLTHMRELAAIRRERRRRRGMLE
LSMPDCELQYDDEGRVVDAHYAPQDEAHQIIEEFMVTANEAVAQHLGDLNISILRRVHEK
PDPLKLKAFAEFLRSLDIKIEEYQSRFELQRVLAEVKDRPERHAVNYALLRSLKEAVYSP
DEEGHFALASDSYCHFTSPIRRYPDLVVHRLLQQLLETGKSGSDYSELVVLGEHCSFTER
RAEKAERELVKIKLLSHLADRVGQEMDFVITGVEEFGLFAQGVVLPAEGLIHIRTLTDDF
YQLDRATHSLVGMQRGQRYRLGDQVRGVIVNVDLEQRELDLRLAGNTSPRRRRTTSPKRS
PKPLPKKGRGKGRKRK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaccatcgaggaacgacttctcgacttcttgcgccaagcgagctatcgcccc
gtcaaacccaaggtgttggcgcgccaactcagtatcggatcggaagactacggcgagttc
cgccagacgatcaagaccatgatccgtcgtggactcatcgagatcggcaacaaaaacacg
gtccgtctcgctcagtcccggagccgactcctgggagtctaccggcaaacccgcaagggc
gatggctgggtcacgcctcgtcccggtcaaggaagcccgccaggcgacattcacatcggc
cagcgcttcacctccgacgccgcccggggagacgtcgtgctcgtcgaggtcatcaaaccg
ccacgatcgactcgcgccgccgagggccgcatcaacgagatcgtcgagcgggccagcagc
cactttgtcggaacctacttcacgaccggccacgagggcttcgtccgcgttgacggcaac
gcctttcatgagccgatctacgtcggcgaccccggcgccaagggagccaagcagggcgac
aaggtcgtcttcgagatgctccgttttccctctcccgacatgacgggcgagggtgttctc
accgaggtgctcggcccacgcggcgctcccggtgtggaccttctcgcggtcgttcggcaa
ttccacttgcccgacaccttctcctcccaggccctcgacgaggcgcgggcccaagcccga
ctcttcgacgagcaacccgtcgatcccaatcgcgtcgacttgaccggaacgacgatcgtc
acgatcgacccggtcgacgctcgggacttcgacgacgccatcagcctctcacgcgacgac
aaggggttttggaacctcggcgtccacatcgccgacgtcgcgtcgttcgtgccccagggt
tcggtgctcgacgccgaggctcgcgaacgggggacgtcggtctacttgccgggacgcgtc
atcccgatgctgccggaactgatttccaacgggctggcgagtctgcaagaggggaaaacc
cgctacgtcaagtcggccttcatcgagttcgacgccgagggtcgcatcacgaacacgcgc
ttctccaacagtgtcatcaaggtgacacggcgcttcgcctacgaacaggtgatggagttc
ttcgagtcgtcggacgatctcgccgactcgatcccgcccgagattcgggaactgctcacg
catatgcgcgagttggcggcgatccgacgcgaacggcgccggcgtcgtggcatgctcgaa
ctgtcgatgcccgattgcgaactgcagtacgatgacgaagggcgcgtcgtcgatgctcac
tacgctccgcaggacgaggcccaccagatcattgaggagttcatggtcaccgccaacgag
gcggtggcgcagcatctgggcgacttgaatatctcgattcttcgccgcgttcacgagaag
cccgatccgttgaagctcaaggctttcgccgagtttctgcgttcgctcgacatcaagatc
gaggagtaccagagccgcttcgaacttcagcgggtcctcgcggaggtgaaggatcggccc
gaacgccatgccgtcaactacgcgttgctgcggagcttgaaggaagcggtctattcgccc
gatgaagaagggcacttcgccctcgccagcgacagctattgccacttcaccagtccgatt
cggcgctaccccgacctcgtcgttcatcggctcttgcagcaactcctcgagaccggcaag
tcgggttcggactactcggagttggtcgtcctgggcgaacactgttccttcaccgagcgc
cgcgccgaaaaggccgaacgcgagttggtcaagatcaagctcctcagtcatctcgccgac
cgcgtcggccaggagatggacttcgtgatcaccggcgtcgaggagttcgggctctttgcc
caaggggttgtgttgcccgcggaggggctcattcacatccggacgcttaccgacgacttc
taccagctcgatcgggccacccatagcttggtcgggatgcagcgaggtcagcgctatcgg
ctcggcgatcaagtgcggggcgtcatcgtcaatgtcgatctcgagcaacgcgaactcgat
cttcggttggcgggcaatacctctccacgccgtcgccggacgacgagcccgaaacgctcc
cccaagccgctgccgaagaagggccgcggcaaaggtcgcaagaggaagtag
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